Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 8.4e-120 433.7 221 100.0
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.3e-93 346.7 221 76.9
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 6.7e-93 344.4 220 76.4
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 8.7e-93 344.0 221 75.6
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 2.5e-92 342.4 221 74.7
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 3.3e-92 342.0 221 74.2
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 7.4e-92 340.9 221 76.9
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.6e-91 339.7 221 73.3
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 2.8e-91 339.0 221 74.2
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 6.3e-91 337.8 221 72.4
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 6.3e-91 337.8 220 75.0
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 4.1e-90 335.1 221 75.6
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 5.3e-90 334.7 221 74.2
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 5.3e-90 334.7 220 74.1
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 6.9e-90 334.3 221 71.9
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 9.0e-90 334.0 221 71.5
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.0e-89 332.8 221 74.7
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 5.9e-89 331.3 220 72.7
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 5.9e-89 331.3 221 72.9
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 2.9e-88 328.9 221 72.9
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 2.9e-88 328.9 221 73.3
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 3.8e-88 328.6 220 72.3
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 3.8e-88 328.6 238 69.7
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 8.4e-88 327.4 221 72.4
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 1.9e-87 326.2 221 72.9
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 3.2e-87 325.5 231 71.4
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 3.2e-87 325.5 221 72.4
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 1.6e-86 323.2 221 70.1
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 2.1e-86 322.8 219 70.8
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 2.1e-86 322.8 221 70.1
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 2.7e-86 322.4 219 70.8
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 4.6e-86 321.6 221 71.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 6.1e-86 321.2 221 71.9
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 7.9e-86 320.9 221 71.5
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 2.3e-85 319.3 221 71.0
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 3.0e-85 318.9 221 71.0
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 3.0e-85 318.9 221 71.0
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 3.9e-85 318.5 221 70.1
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 6.7e-85 317.8 221 70.1
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 5.7e-84 314.7 221 69.7
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 2.2e-83 312.8 221 68.3
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 1.4e-82 310.1 219 69.4
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.4e-82 310.1 274 60.2
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 5.3e-82 308.1 236 66.5
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 9.0e-82 307.4 206 74.8
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.5e-81 306.6 221 67.9
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 2.0e-81 306.2 221 68.3
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 5.9e-81 304.7 221 65.2
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 2.2e-80 302.8 221 67.0
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 2.9e-80 302.4 221 67.0
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 5.0e-80 301.6 221 67.4
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 1.1e-79 300.4 220 66.8
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.1e-79 300.4 219 68.9
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 1.6e-78 296.6 221 65.6
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 2.1e-78 296.2 235 63.8
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 3.6e-78 295.4 220 67.3
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 3.6e-78 295.4 221 64.7
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 1.4e-77 293.5 228 64.9
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 1.4e-77 293.5 221 64.7
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 1.8e-77 293.1 221 67.0
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 3.9e-77 292.0 221 64.7
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 3.9e-77 292.0 221 64.7
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 3.9e-77 292.0 221 65.6
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 5.1e-77 291.6 221 64.3
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 5.1e-77 291.6 221 63.8
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 5.1e-77 291.6 221 64.3
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 6.7e-77 291.2 221 64.7
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 2.6e-76 289.3 221 64.3
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 4.3e-76 288.5 221 64.7
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 5.7e-76 288.1 221 67.9
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 5.7e-76 288.1 257 60.3
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 5.7e-76 288.1 221 64.3
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 9.7e-76 287.3 221 67.0
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 1.3e-75 287.0 221 63.8
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 4.8e-75 285.0 221 62.0
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 8.2e-75 284.3 221 62.4
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 1.1e-74 283.9 221 61.5
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 1.4e-74 283.5 221 62.9
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 1.4e-74 283.5 221 67.0
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 3.1e-74 282.3 221 62.0
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 7.7e-73 277.7 202 68.3
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 7.7e-73 277.7 239 60.7
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.0e-72 277.3 221 61.5
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 6.5e-72 274.6 221 65.2
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 2.6e-68 262.7 206 66.0
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.3e-67 260.4 216 58.3
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 2.2e-67 259.6 216 58.8
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 1.8e-66 256.5 197 65.5
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 4.5e-65 251.9 207 59.9
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 4.5e-65 251.9 207 59.9
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 4.5e-65 251.9 172 70.3
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.9e-64 249.2 230 58.7
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.5e-63 246.9 221 57.9
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 1.9e-63 246.5 211 58.8
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 3.2e-63 245.7 257 54.9
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 2.7e-62 242.7 198 61.1
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 4.0e-61 238.8 172 66.9
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 6.7e-61 238.0 206 63.6
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.0e-60 236.5 206 63.6
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 2.0e-60 236.5 176 64.2
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.3e-56 223.8 183 60.7
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.7e-56 223.4 276 50.4
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.2e-56 223.0 159 69.2
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 2.3e-53 213.0 147 70.1
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 4.4e-52 208.8 143 67.8
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 2.7e-49 199.5 218 52.3
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 4.5e-49 198.7 165 66.1
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 7.2e-47 191.4 119 77.3
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 7.2e-47 191.4 129 69.8
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.6e-46 190.3 221 49.8
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 4.0e-45 185.7 170 57.6
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 1.1e-42 177.6 120 71.7
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 5.7e-36 155.2 122 63.9
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.4e-34 150.6 130 58.5
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.6e-30 137.1 143 51.7
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 1.6e-30 137.1 212 35.8
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.0e-28 130.2 204 33.8
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 6.8e-21 105.1 129 47.3
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 6.4e-19 98.6 76 61.8
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 6.6e-16 88.6 69 55.1
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 7.8e-09 65.1 43 74.4
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 5.1e-08 62.4 84 42.9


User provided reference genes

Program Settings