Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.8e-96 355.9 175 100.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.9e-50 203.0 173 58.4
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 5.5e-50 201.4 170 60.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.2e-50 201.1 177 56.5
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.2e-49 200.3 175 59.4
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 6.1e-49 198.0 173 58.4
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.1e-49 198.0 175 59.4
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 6.1e-49 198.0 173 56.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.0e-48 197.2 173 56.6
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.0e-48 197.2 173 56.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-48 196.8 174 58.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.3e-48 196.1 172 57.6
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.0e-48 195.7 174 52.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.0e-48 195.3 173 58.4
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 5.2e-48 194.9 179 57.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.0e-47 193.0 179 55.9
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 3.4e-47 192.2 164 58.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.4e-47 191.8 169 57.4
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-46 189.9 169 54.4
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.8e-46 189.1 160 56.9
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.9e-46 188.3 195 52.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.9e-46 188.3 175 58.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 8.3e-46 187.6 164 55.5
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.4e-45 186.8 170 57.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.8e-45 186.4 129 68.2
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.8e-45 186.4 175 53.1
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.8e-45 186.4 137 59.1
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.4e-45 186.0 131 67.2
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.4e-45 186.0 176 54.0
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.1e-45 185.7 123 69.9
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.1e-45 185.7 176 53.4
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.1e-45 185.7 181 50.8
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.1e-45 185.7 171 55.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 4.1e-45 185.3 169 54.4
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.4e-45 184.9 169 53.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.0e-45 184.5 123 67.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 7.0e-45 184.5 181 50.3
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.0e-45 184.5 177 50.3
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.2e-44 183.7 166 56.0
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.2e-44 183.7 174 52.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.6e-44 183.3 181 50.3
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.0e-44 183.0 174 51.1
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.0e-44 183.0 137 59.9
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.0e-44 183.0 171 53.8
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.0e-44 183.0 169 54.4
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.0e-44 183.0 180 52.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.0e-44 183.0 172 54.1
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 2.7e-44 182.6 179 53.6
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 4.5e-44 181.8 174 53.4
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 7.7e-44 181.0 175 53.1
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.3e-43 179.5 119 66.4
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.9e-43 179.1 126 65.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.0e-43 178.3 176 50.0
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.6e-43 177.6 126 64.3
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 8.6e-43 177.6 175 49.1
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.5e-42 176.0 180 51.1
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.3e-42 175.6 126 64.3
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 7.2e-42 174.5 206 46.1
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.2e-42 174.5 117 67.5
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 9.5e-42 174.1 121 63.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 9.5e-42 174.1 169 51.5
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.2e-41 173.7 131 61.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.6e-41 173.3 167 50.9
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.6e-41 173.3 112 69.6
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.8e-41 172.6 119 63.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 3.6e-41 172.2 138 58.7
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.6e-41 172.2 179 50.8
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 4.7e-41 171.8 162 54.3
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 4.7e-41 171.8 167 54.5
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 4.7e-41 171.8 141 58.9
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 8.0e-41 171.0 132 59.8
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.0e-40 170.6 125 60.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.4e-40 170.2 117 63.2
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 182 50.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 182 50.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.3e-40 169.5 114 64.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 3.0e-40 169.1 126 61.1
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.0e-40 168.7 128 60.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 5.2e-40 168.3 157 50.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.2e-40 168.3 154 51.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.8e-40 167.9 169 47.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 8.9e-40 167.5 146 53.4
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.5e-39 166.8 170 49.4
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.6e-39 166.0 164 51.2
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.4e-39 165.6 152 52.6
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 4.4e-39 165.2 164 51.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 5.7e-39 164.9 117 64.1
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 5.7e-39 164.9 130 61.5
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 9.8e-39 164.1 171 49.1
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-38 163.3 119 59.7
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.7e-38 163.3 126 61.9
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.2e-38 162.9 149 51.7
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 3.7e-38 162.2 167 49.1
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.7e-38 162.2 167 50.3
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.7e-38 162.2 167 50.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.9e-38 161.8 127 58.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.9e-38 161.8 120 64.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 6.4e-38 161.4 171 47.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 8.3e-38 161.0 120 59.2
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 8.3e-38 161.0 159 50.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 8.3e-38 161.0 159 50.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 8.3e-38 161.0 159 50.3
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.1e-37 160.6 170 47.6
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.2e-37 159.1 160 51.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 4.1e-37 158.7 160 50.6
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 4.1e-37 158.7 158 50.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 5.4e-37 158.3 118 61.9
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 5.4e-37 158.3 171 50.9
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 7.0e-37 157.9 171 49.1
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 7.0e-37 157.9 171 49.1
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 7.0e-37 157.9 171 49.1
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 7.0e-37 157.9 171 49.1
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 7.0e-37 157.9 157 49.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 9.2e-37 157.5 128 57.8
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 9.2e-37 157.5 148 52.7
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-36 156.8 127 56.7
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.0e-36 156.4 172 47.1
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.0e-36 156.4 172 47.1
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 2.0e-36 156.4 149 48.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.0e-36 156.4 153 50.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 4.6e-36 155.2 152 50.0
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 5.9e-36 154.8 172 47.1
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.8e-36 154.5 119 57.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.3e-35 153.7 171 47.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 2.9e-35 152.5 158 48.7
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.9e-35 152.5 121 57.0
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 6.6e-35 151.4 167 46.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 6.6e-35 151.4 140 50.7
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 8.6e-35 151.0 116 57.8
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-33 145.6 115 55.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 4.7e-33 145.2 170 47.6
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.8e-32 143.3 119 55.5
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.1e-32 142.5 120 55.0
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.5e-31 140.2 118 52.5
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.2e-30 136.3 117 55.6
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.4e-30 134.8 132 51.5
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.4e-30 134.8 110 53.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.1e-29 134.0 166 45.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 5.4e-29 131.7 143 46.9
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 6.0e-28 128.3 139 46.8
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-27 126.7 112 53.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 2.3e-27 126.3 147 46.3
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.9e-27 125.6 90 61.1
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 5.0e-27 125.2 117 49.6
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 6.6e-27 124.8 96 60.4
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-26 123.6 95 60.0
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.5e-26 120.9 89 59.6
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.2e-24 115.2 92 58.7
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.4e-23 112.5 118 46.6
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 4.4e-23 112.1 109 52.3
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.9e-22 109.4 118 44.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 6.4e-22 108.2 111 47.7
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.9e-21 106.7 109 51.4
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 5.4e-21 105.1 119 47.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.5e-20 102.4 77 54.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.5e-20 102.4 126 38.9
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.9e-19 99.0 104 43.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.9e-19 99.0 74 58.1
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.6e-19 97.8 73 61.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.9e-18 96.7 126 42.9
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 9.5e-18 94.4 109 42.2
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.8e-17 92.8 105 44.8
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 5.2e-16 88.6 60 63.3
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 8.9e-16 87.8 106 43.4
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-15 86.3 144 37.5
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-14 83.6 149 33.6
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.7e-12 76.3 101 37.6
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 7.3e-10 68.2 64 50.0
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.4e-07 59.3 103 34.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 7.6e-07 58.2 43 55.8


User provided reference genes

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