Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.1e-220 769.6 376 100.0
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 1.5e-156 556.6 391 70.1
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.0e-150 536.2 390 69.0
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.0e-150 536.2 386 69.7
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 1.0e-149 533.9 382 67.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.3e-149 533.5 391 67.3
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 6.6e-149 531.2 375 66.4
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 2.5e-148 529.3 379 66.0
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 4.2e-148 528.5 379 66.0
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 7.2e-148 527.7 374 67.9
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 7.2e-148 527.7 388 67.8
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 9.5e-148 527.3 372 68.3
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 2.1e-147 526.2 371 67.7
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 2.8e-147 525.8 375 69.6
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 1.2e-145 520.4 409 64.1
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 1.5e-145 520.0 394 66.0
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 2.6e-145 519.2 383 67.4
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 3.4e-145 518.8 391 66.0
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 5.7e-145 518.1 402 65.2
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.3e-144 516.9 387 65.6
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.4e-143 512.7 403 61.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 4.1e-143 511.9 385 63.9
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 4.1e-143 511.9 386 65.5
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 5.9e-142 508.1 386 64.2
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 1.0e-141 507.3 387 63.0
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.0e-141 505.0 383 63.2
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 6.6e-141 504.6 390 62.8
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 1.1e-140 503.8 383 61.9
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.1e-140 503.8 387 63.0
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.9e-140 503.1 373 65.7
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.5e-140 502.7 385 63.1
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 5.6e-140 501.5 373 64.6
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 7.3e-140 501.1 383 66.6
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 9.5e-140 500.7 383 62.7
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.2e-139 500.4 383 62.7
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.7e-139 498.4 391 62.7
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 8.0e-139 497.7 373 64.9
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.0e-138 497.3 384 65.1
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.4e-138 496.9 390 63.6
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 2.3e-138 496.1 384 63.8
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 5.2e-138 495.0 384 61.5
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 1.2e-137 493.8 382 64.4
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 5.8e-137 491.5 379 62.0
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 5.8e-137 491.5 385 61.6
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 7.5e-137 491.1 382 60.5
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 9.8e-137 490.7 455 56.3
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.2e-136 489.6 385 61.8
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 6.4e-136 488.0 383 60.1
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 8.3e-136 487.6 379 62.5
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 8.3e-136 487.6 385 61.3
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 3.2e-135 485.7 382 60.5
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 5.4e-135 485.0 424 57.5
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.6e-134 483.4 404 59.4
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.0e-134 483.0 420 58.3
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 2.0e-134 483.0 474 55.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 2.7e-134 482.6 412 59.5
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 3.5e-134 482.3 382 59.7
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 3.5e-134 482.3 384 60.2
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 4.6e-134 481.9 381 61.7
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 4.6e-134 481.9 387 62.8
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.3e-133 480.3 376 63.8
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 1.7e-133 479.9 412 60.4
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.1e-132 477.2 384 58.9
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.1e-131 473.0 355 67.3
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 2.8e-131 472.6 384 58.1
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 3.6e-131 472.2 384 60.2
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 3.6e-131 472.2 384 58.6
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 3.6e-131 472.2 384 58.6
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 1.4e-130 470.3 381 61.2
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 1.1e-127 460.7 373 60.3
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 3.5e-126 455.7 352 63.1
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.0e-125 454.1 501 50.9
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 3.9e-125 452.2 401 57.6
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 1.5e-124 450.3 374 59.4
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.1e-123 446.4 390 59.0
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 3.6e-123 445.7 386 57.8
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 3.4e-121 439.1 371 60.1
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 7.6e-121 438.0 371 56.6
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 7.6e-121 438.0 383 55.1
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.3e-120 437.2 361 59.3
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 2.4e-119 433.0 372 56.5
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 6.6e-117 424.9 390 54.6
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 4.3e-116 422.2 371 57.4
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 2.9e-112 409.5 296 66.2
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 9.6e-108 394.4 373 56.8
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 2.8e-107 392.9 499 45.3
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.2e-96 356.7 389 50.6
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 8.4e-96 354.8 271 63.8
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 3.2e-95 352.8 319 56.1
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.3e-91 340.9 379 48.3
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 1.5e-89 334.0 371 47.4
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 2.2e-88 330.1 215 70.7
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 3.2e-79 299.7 293 53.9
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 3.2e-79 299.7 374 42.2
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.6e-78 297.4 210 68.1
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 2.1e-78 297.0 356 47.5
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.3e-76 289.3 169 76.3
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 4.5e-73 279.3 228 61.8
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.0e-69 268.1 172 69.8
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 3.9e-69 266.2 410 44.9
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 7.7e-65 251.9 227 58.6
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 2.7e-62 243.4 150 73.3
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.1e-60 238.0 141 74.5
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.0e-60 237.3 240 52.1
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.2e-54 218.0 369 41.2
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.1e-54 217.2 565 28.3
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 6.3e-51 205.7 123 77.2
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 3.1e-50 203.4 156 61.5
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.9e-49 199.1 134 64.9
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-48 198.0 372 36.8
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 2.5e-47 193.7 114 74.6
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 2.3e-45 187.2 248 40.7
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 7.5e-44 182.2 156 58.3
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 8.3e-43 178.7 272 38.6
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.3e-40 171.4 261 40.6
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.6e-38 164.5 99 72.7
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 5.2e-37 159.5 432 29.6
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 2.0e-36 157.5 179 49.7
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 8.0e-30 135.6 79 78.5
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.0e-24 118.6 381 28.9
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 2.3e-24 117.5 446 26.5
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.5e-23 114.0 122 48.4
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.3e-23 113.6 416 29.3
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 1.5e-20 104.8 211 34.1
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 1.5e-20 104.8 211 34.1
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 3.4e-20 103.6 55 78.2
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 7.0e-18 95.9 60 65.0
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 9.2e-18 95.5 54 83.3
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 3.5e-17 93.6 103 48.5
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 5.0e-16 89.7 51 80.4
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 1.4e-10 71.6 378 24.6
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 4.1e-10 70.1 41 73.2
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 7.1e-10 69.3 53 60.4
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 3.9e-08 63.5 375 24.8
PSO782G0979 Papaver somniferum HOM05D002561 ORTHO05D006466 2.5e-07 60.8 375 21.6
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 3.3e-07 60.5 31 67.7
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 9.5e-07 58.9 35 80.0
Cre12.g510150 Chlamydomonas reinhardtii HOM05D001335 ORTHO05D001184 2.1e-06 57.8 284 22.2
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 4.7e-06 56.6 31 64.5
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 4.7e-06 56.6 27 77.8
ATR0585G118 Amborella trichopoda HOM05D004386 ORTHO05D005247 8.1e-06 55.8 321 20.9


User provided reference genes

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