Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.4e-139 499.6 251 100.0
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 6.4e-116 421.0 234 86.8
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.2e-115 418.7 233 87.6
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 5.4e-115 417.9 231 88.7
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 3.5e-114 415.2 230 88.3
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 7.8e-114 414.1 234 85.9
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.3e-113 413.3 230 87.8
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.7e-113 412.9 234 85.9
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 6.6e-113 411.0 234 85.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 8.6e-113 410.6 230 86.1
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 8.6e-113 410.6 234 85.5
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 8.6e-113 410.6 232 86.2
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.5e-112 409.1 232 85.8
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 2.5e-112 409.1 234 85.0
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 9.5e-112 407.1 234 84.2
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 9.5e-112 407.1 233 85.0
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.2e-111 406.8 232 85.8
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.2e-111 406.8 233 85.8
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.2e-111 406.8 234 84.6
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 1.6e-111 406.4 233 85.0
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 1.6e-111 406.4 233 85.0
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.1e-111 406.0 234 84.2
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 4.7e-111 404.8 234 83.8
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 8.1e-111 404.1 234 84.6
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.1e-110 403.7 229 85.2
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 1.8e-110 402.9 230 83.9
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.8e-110 402.9 232 86.2
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 2.3e-110 402.5 233 85.8
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.1e-110 402.1 229 85.6
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 4.0e-110 401.7 232 84.1
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 4.0e-110 401.7 230 84.8
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 5.2e-110 401.4 232 83.2
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 8.9e-110 400.6 232 84.9
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.2e-109 400.2 232 83.6
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.2e-109 400.2 229 84.7
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.5e-109 399.8 232 83.6
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.5e-109 399.8 234 83.8
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.5e-109 399.8 234 83.8
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.0e-109 399.4 233 85.0
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 3.4e-109 398.7 233 83.3
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 3.4e-109 398.7 230 82.6
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.4e-109 398.7 233 83.7
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 3.4e-109 398.7 229 84.3
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 5.8e-109 397.9 229 84.7
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 7.6e-109 397.5 233 82.8
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 9.9e-109 397.1 293 70.3
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.3e-108 396.7 278 73.4
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.7e-108 396.4 230 82.6
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.7e-108 395.2 234 82.9
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 4.9e-108 394.8 232 83.2
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 6.4e-108 394.4 233 84.1
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 6.4e-108 394.4 230 84.8
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 8.3e-108 394.0 234 82.1
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.1e-107 393.7 268 75.0
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.9e-107 392.9 232 82.3
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 3.2e-107 392.1 232 82.3
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 7.1e-107 391.0 230 82.6
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 7.1e-107 391.0 235 82.1
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.2e-106 390.2 229 81.2
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-106 390.2 234 81.2
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.2e-106 390.2 234 82.9
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 2.7e-106 389.0 230 80.4
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.5e-106 388.7 234 80.3
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 4.6e-106 388.3 230 80.4
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 6.0e-106 387.9 229 80.8
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 6.0e-106 387.9 233 82.0
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.0e-105 387.1 229 80.3
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.0e-105 387.1 230 80.9
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.3e-105 386.7 234 79.9
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 2.3e-105 386.0 234 80.8
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 2.3e-105 386.0 234 80.8
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 3.9e-105 385.2 234 79.9
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 3.9e-105 385.2 234 79.9
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 3.9e-105 385.2 234 79.9
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 3.9e-105 385.2 231 81.0
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.9e-105 385.2 232 82.3
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.6e-105 384.4 234 80.3
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 8.6e-105 384.0 229 82.1
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 8.6e-105 384.0 234 79.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 8.6e-105 384.0 234 80.3
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 8.6e-105 384.0 234 79.5
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 8.6e-105 384.0 232 81.5
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 1.1e-104 383.6 230 80.0
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.1e-104 383.6 229 80.8
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 1.1e-104 383.6 230 80.4
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.1e-104 383.6 229 79.9
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.1e-104 383.6 232 80.2
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.5e-104 383.3 232 81.0
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.9e-104 382.9 242 79.3
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 2.5e-104 382.5 234 79.5
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 3.3e-104 382.1 228 81.1
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 3.3e-104 382.1 230 80.0
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 3.3e-104 382.1 232 81.9
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 4.3e-104 381.7 234 79.5
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 9.6e-104 380.6 234 79.5
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 9.6e-104 380.6 233 81.5
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-103 380.2 234 79.1
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.2e-103 380.2 230 79.6
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.2e-103 380.2 230 79.6
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.2e-103 380.2 233 80.7
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 1.6e-103 379.8 230 79.1
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.6e-103 379.8 234 78.6
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 4.7e-103 378.3 233 79.0
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 6.2e-103 377.9 232 79.7
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.2e-103 377.9 232 80.2
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 6.2e-103 377.9 241 78.4
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 1.8e-102 376.3 233 80.3
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 5.2e-102 374.8 233 78.1
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 5.2e-102 374.8 240 77.1
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 5.2e-102 374.8 230 80.0
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.2e-101 373.6 234 78.2
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.2e-101 373.6 229 77.7
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.5e-101 373.2 229 78.2
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 4.4e-101 371.7 234 76.9
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 9.9e-101 370.5 229 77.3
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 2.9e-100 369.0 229 78.6
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.8e-100 368.6 230 78.7
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 6.4e-100 367.9 243 77.4
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.1e-99 367.1 229 76.4
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.4e-99 366.7 233 79.4
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.9e-99 366.3 230 77.8
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 7.1e-99 364.4 229 76.9
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 2.1e-98 362.8 229 76.4
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 4.6e-98 361.7 216 81.9
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.3e-97 359.4 233 78.1
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 9.6e-96 354.0 232 74.6
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.6e-95 353.2 229 74.2
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.4e-94 350.1 232 75.9
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 6.9e-94 347.8 229 74.2
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.0e-93 346.3 231 77.1
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.6e-90 335.1 236 70.8
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 6.0e-90 334.7 233 72.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.0e-89 334.0 234 70.1
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.3e-89 332.8 234 69.7
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.1e-88 330.5 232 69.8
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 1.6e-87 326.6 232 69.0
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 5.3e-86 321.6 231 67.1
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 2.0e-85 319.7 232 68.1
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 3.4e-85 318.9 236 66.9
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.9e-84 315.8 231 66.2
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 4.9e-84 315.1 199 76.4
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 8.4e-84 314.3 231 65.4
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 7.1e-83 311.2 237 66.2
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 8.1e-79 297.7 186 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 5.7e-72 275.0 235 59.6
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 3.4e-69 265.8 227 61.2
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 8.4e-68 261.2 162 78.4
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 2.2e-60 236.5 160 74.4
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 2.9e-60 236.1 234 52.6
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.9e-59 233.4 145 77.9
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 1.4e-57 227.3 229 50.2
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 4.8e-55 218.8 227 47.6
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.6e-53 213.0 231 46.8
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 4.2e-51 205.7 140 74.3
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 8.2e-39 164.9 87 87.4
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 1.2e-34 151.0 96 70.8
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 4.0e-33 146.0 94 75.5
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 8.0e-26 121.7 82 74.4
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.0e-25 121.3 124 54.0
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 3.4e-24 116.3 152 45.4
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.4e-22 110.9 75 76.0
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.0e-21 107.1 78 71.8
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 6.6e-20 102.1 66 74.2
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 8.6e-20 101.7 75 72.0
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 4.3e-19 99.4 52 86.5
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 6.1e-18 95.5 150 42.0
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 4.7e-10 69.3 53 66.0
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.3e-07 61.2 41 63.4
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 1.7e-07 60.8 58 60.3
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 7.0e-06 55.5 31 77.4


User provided reference genes

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