Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 3.3e-104 381.7 194 100.0
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.3e-15 87.4 80 56.2
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.7e-15 87.0 80 57.5
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.7e-15 87.0 90 53.3
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 2.2e-15 86.7 80 57.5
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.9e-15 86.3 158 35.4
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.9e-15 86.3 80 57.5
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 3.8e-15 85.9 80 57.5
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 3.8e-15 85.9 90 51.1
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 6.4e-15 85.1 110 41.8
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 57.9
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 8.4e-15 84.7 76 55.3
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 8.4e-15 84.7 74 58.1
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 1.1e-14 84.3 76 56.6
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 1.1e-14 84.3 83 50.6
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 1.1e-14 84.3 80 55.0
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.4e-14 84.0 83 53.0
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 1.4e-14 84.0 74 58.1
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 1.4e-14 84.0 77 57.1
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 1.4e-14 84.0 69 62.3
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.9e-14 83.6 105 42.9
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 1.9e-14 83.6 69 60.9
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.9e-14 83.6 80 53.8
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 2.4e-14 83.2 74 56.8
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 3.2e-14 82.8 86 48.8
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 3.2e-14 82.8 80 53.8
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 3.2e-14 82.8 74 54.1
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 3.2e-14 82.8 74 54.1
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 3.2e-14 82.8 74 54.1
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.2e-14 82.4 160 35.6
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.2e-14 82.4 74 54.1
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 4.2e-14 82.4 74 54.1
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 5.4e-14 82.0 90 48.9
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 5.4e-14 82.0 101 46.5
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 7.1e-14 81.6 69 59.4
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 7.1e-14 81.6 76 57.9
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.2e-13 80.9 74 55.4
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.2e-13 80.9 74 55.4
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.2e-13 80.9 74 55.4
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.2e-13 80.9 74 55.4
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.2e-13 80.9 82 52.4
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-13 80.5 74 55.4
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 2.1e-13 80.1 74 54.1
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.1e-13 80.1 70 58.6
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.5e-13 79.3 92 44.6
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.5e-13 79.3 92 44.6
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 3.5e-13 79.3 92 44.6
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 4.6e-13 79.0 86 46.5
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 4.6e-13 79.0 155 32.9
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 4.6e-13 79.0 92 44.6
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 4.6e-13 79.0 74 54.1
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 6.0e-13 78.6 69 56.5
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.0e-12 77.8 78 51.3
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.3e-12 76.6 69 58.0
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 2.3e-12 76.6 69 58.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.3e-12 76.6 92 47.8
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.0e-12 76.3 92 47.8
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.0e-12 76.3 69 56.5
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 6.6e-12 75.1 74 51.4
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 6.6e-12 75.1 111 43.2
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 3.3e-11 72.8 71 54.9
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 4.3e-11 72.4 103 41.7
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 4.3e-11 72.4 104 45.2
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 7.3e-11 71.6 148 35.8
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 7.3e-11 71.6 103 41.7
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 7.3e-11 71.6 103 41.7
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 7.3e-11 71.6 103 40.8
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 9.6e-11 71.2 103 40.8
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 9.6e-11 71.2 103 40.8
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 9.6e-11 71.2 103 40.8
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 9.6e-11 71.2 103 40.8
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 1.6e-10 70.5 103 39.8
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 2.1e-10 70.1 103 39.8
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.1e-10 70.1 104 41.3
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 2.1e-10 70.1 137 38.0
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.1e-10 70.1 137 38.0
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 2.8e-10 69.7 67 55.2
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 3.6e-10 69.3 103 39.8
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 6.2e-10 68.6 70 50.0
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 6.2e-10 68.6 137 37.2
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.4e-09 67.4 134 38.1
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.8e-09 67.0 59 59.3
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.3e-09 65.5 75 48.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 5.8e-08 62.0 55 60.0
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 5.8e-08 62.0 55 60.0
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 5.8e-08 62.0 55 60.0
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 5.8e-08 62.0 55 60.0
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 5.8e-08 62.0 55 60.0
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 1.3e-07 60.8 62 50.0
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 2.9e-07 59.7 65 46.2
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 4.9e-07 58.9 55 58.2
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.1e-06 57.8 52 55.8
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.4e-06 56.6 67 46.3
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 4.2e-06 55.8 76 42.1
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 5.4e-06 55.5 78 43.6
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.4e-06 55.5 78 43.6
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.4e-06 55.5 126 34.9
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 5.4e-06 55.5 55 47.3
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 5.4e-06 55.5 55 47.3
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 7.1e-06 55.1 62 48.4
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.1e-06 55.1 78 43.6
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 9.3e-06 54.7 71 42.3


User provided reference genes

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