Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.5e-306 1055.4 550 100.0
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.8e-203 713.0 541 70.8
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.0e-202 709.5 543 68.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.4e-202 708.4 555 69.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.2e-201 706.1 554 67.7
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.1e-200 702.2 555 67.7
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.1e-197 693.7 554 66.6
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 8.0e-196 687.6 545 67.3
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.8e-195 686.4 554 66.2
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.4e-192 676.0 565 64.4
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.8e-191 671.0 592 61.7
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.3e-190 670.2 555 67.6
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.3e-190 670.2 566 63.6
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.3e-190 670.2 554 65.7
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.3e-190 669.5 553 66.2
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.0e-190 668.3 545 65.7
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 8.6e-190 667.5 526 67.1
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 5.6e-189 664.8 550 66.4
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.5e-189 664.1 540 65.6
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 9.5e-189 664.1 575 63.5
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.8e-188 662.5 553 65.5
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.4e-187 660.2 552 64.7
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.0e-187 659.1 557 65.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 5.2e-187 658.3 553 64.4
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 6.8e-187 657.9 545 65.0
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.0e-186 656.4 562 63.7
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.6e-186 656.0 541 65.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.7e-185 652.1 536 65.7
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.7e-185 652.1 552 63.8
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.1e-184 650.6 551 64.6
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.4e-184 650.2 559 63.3
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.1e-184 648.7 556 64.2
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 5.4e-184 648.3 563 62.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.5e-183 645.6 553 63.7
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.6e-183 645.2 560 64.8
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.1e-181 640.6 563 62.5
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 9.5e-181 637.5 565 63.4
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 2.3e-179 632.9 573 61.3
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.0e-179 632.1 563 62.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 4.0e-179 632.1 544 63.1
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.8e-179 631.3 540 64.6
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-178 630.2 563 61.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 9.8e-178 627.5 562 62.3
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 9.8e-178 627.5 552 62.7
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.1e-176 624.0 545 61.7
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.9e-176 623.2 554 62.6
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 5.4e-176 621.7 562 61.6
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.2e-175 620.5 553 59.7
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 6.0e-175 618.2 556 61.9
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.3e-174 616.3 592 59.1
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.1e-172 609.8 556 59.2
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.7e-172 608.6 559 61.9
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 6.2e-172 608.2 555 61.3
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.1e-171 605.9 545 61.1
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 4.0e-171 605.5 556 60.4
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 5.2e-171 605.1 559 60.3
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.2e-170 604.0 567 60.3
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 2.6e-170 602.8 556 61.0
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.9e-169 598.6 540 61.9
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.4e-168 597.0 558 60.6
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 9.2e-168 594.3 583 58.7
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 3.5e-167 592.4 539 61.4
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 4.6e-167 592.0 480 67.3
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 2.3e-166 589.7 556 60.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 6.6e-166 588.2 559 59.2
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.9e-165 586.6 548 59.1
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.6e-164 582.4 536 59.7
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 5.2e-163 578.6 524 61.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 8.9e-163 577.8 556 58.8
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.6e-162 576.2 580 57.8
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 5.8e-162 575.1 558 57.9
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.9e-161 572.8 562 57.8
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 8.4e-161 571.2 553 59.0
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.9e-160 570.1 554 57.9
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.9e-160 570.1 549 58.5
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.5e-159 565.8 550 58.9
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 3.5e-159 565.8 555 59.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.7e-158 563.5 548 58.9
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.9e-158 562.4 566 56.5
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 5.1e-158 562.0 550 58.4
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.3e-157 559.3 566 55.3
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 9.6e-157 557.8 550 58.2
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 9.6e-157 557.8 550 58.2
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.8e-155 553.5 550 57.8
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.9e-155 551.6 585 53.8
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 4.4e-154 548.9 552 56.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.2e-152 542.7 561 54.5
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 5.4e-152 542.0 561 55.1
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-151 539.3 553 55.5
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 6.6e-150 535.0 554 56.0
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-149 533.9 554 54.7
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-149 533.5 553 54.4
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 5.6e-149 531.9 548 56.0
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.2e-146 524.2 561 55.1
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-146 523.1 554 54.0
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.7e-145 520.4 564 54.8
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 4.8e-140 502.3 517 55.1
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 4.8e-140 502.3 560 52.5
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.0e-139 499.2 511 56.4
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.5e-138 497.3 434 60.8
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 4.6e-135 485.7 555 52.6
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 7.9e-135 485.0 548 52.2
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.5e-133 480.7 517 54.7
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.5e-130 470.7 559 50.1
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.0e-129 468.0 568 50.2
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.7e-129 467.2 500 54.6
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 2.2e-129 466.8 536 54.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.2e-124 450.3 398 63.3
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.8e-115 420.6 339 67.8
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.2e-111 407.9 378 58.7
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 2.2e-105 387.1 275 71.6
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-102 377.1 545 45.1
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.9e-102 376.3 276 70.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.3e-100 369.0 275 68.4
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.0e-98 364.0 460 49.3
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-93 347.4 404 50.5
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 7.0e-91 339.0 272 66.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.9e-81 307.0 272 62.1
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.5e-72 278.1 230 64.3
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.2e-69 268.5 595 34.6
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 2.2e-68 264.2 271 56.8
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.2e-67 260.4 240 62.9
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.9e-65 253.4 300 52.0
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.3e-64 250.4 241 58.5
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-61 241.5 279 53.0
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 9.2e-59 232.3 271 50.9
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.2e-58 231.9 278 49.3
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.7e-58 230.7 273 53.5
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.8e-55 220.7 214 56.1
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 8.1e-55 219.2 260 50.0
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-53 213.8 255 47.8
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.7e-52 211.5 461 34.3
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.9e-51 208.0 275 46.5
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.4e-46 191.0 621 29.6
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.2e-45 188.7 270 45.2
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 3.4e-45 187.2 477 32.9
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 3.8e-44 183.7 172 52.9
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 5.4e-43 179.9 107 83.2
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-38 165.6 206 50.0
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-38 164.9 149 59.7
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.3e-38 163.3 182 53.8
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 5.3e-38 163.3 165 53.3
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.5e-37 161.8 220 47.3
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.6e-37 161.0 202 47.5
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.6e-37 161.0 144 63.2
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 6.6e-33 146.4 104 70.2
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.7e-33 146.0 161 54.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.8e-31 141.0 106 67.9
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 2.8e-31 141.0 137 59.9
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 5.8e-29 133.3 158 46.8
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 9.6e-24 115.9 205 36.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.4e-22 111.3 135 50.4
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.1e-22 110.9 74 73.0
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 5.3e-22 110.2 105 57.1
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.2e-21 109.0 175 40.0
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.5e-21 107.1 259 31.7
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 3.3e-16 90.9 68 63.2
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 7.4e-16 89.7 205 33.2
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.8e-15 87.8 354 28.0
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.2e-15 86.7 87 54.0
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 2.4e-14 84.7 141 39.7
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.1e-10 71.6 50 68.0
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 7.4e-08 63.2 30 90.0
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.6e-07 62.0 45 64.4
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 2.2e-07 61.6 50 62.0
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 1.1e-06 59.3 165 38.2
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 1.4e-06 58.9 41 68.3
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 2.4e-06 58.2 67 50.7
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 2.4e-06 58.2 67 50.7
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.3e-06 57.0 73 43.8


User provided reference genes

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