Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 0.0e+00 1171.4 551 100.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 6.9e-163 578.2 566 57.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 4.2e-160 568.9 551 57.7
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 6.0e-159 565.1 551 55.4
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.0e-158 564.3 550 55.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 8.7e-158 561.2 583 55.1
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.3e-156 557.4 551 54.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.3e-156 557.4 551 55.9
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.6e-156 557.0 550 55.3
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.6e-156 557.0 551 54.3
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 6.2e-156 555.1 554 54.3
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 6.2e-156 555.1 551 55.7
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 8.1e-156 554.7 550 55.5
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 8.1e-156 554.7 550 55.3
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.4e-155 553.9 550 54.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.4e-155 553.1 550 55.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 3.1e-155 552.7 550 54.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 4.0e-155 552.4 550 54.7
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.0e-155 552.4 550 54.9
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 5.3e-155 552.0 550 55.3
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 5.3e-155 552.0 550 54.5
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 6.9e-155 551.6 550 55.1
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.5e-154 550.4 551 54.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 3.4e-154 549.3 550 54.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.5e-154 548.9 550 54.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 7.6e-154 548.1 550 55.1
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.6e-154 548.1 551 54.8
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.3e-153 547.4 550 54.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.2e-153 546.6 551 53.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 6.4e-153 545.0 550 54.0
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.1e-152 544.3 550 54.5
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.4e-152 543.9 550 54.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.4e-152 543.9 549 53.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.9e-152 543.5 551 54.6
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.9e-152 543.5 550 54.4
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.4e-152 543.1 550 54.4
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 3.2e-152 542.7 552 54.2
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.2e-152 542.7 551 53.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.2e-152 542.7 551 54.1
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.2e-152 542.3 550 54.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 5.4e-152 542.0 550 54.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 5.4e-152 542.0 550 54.4
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 5.4e-152 542.0 550 52.9
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 7.1e-152 541.6 550 53.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.2e-151 540.8 553 53.5
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.6e-151 540.4 551 54.1
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.1e-151 540.0 551 53.9
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.1e-151 540.0 550 54.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.1e-151 540.0 550 53.5
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.7e-151 539.7 550 54.2
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.7e-151 539.7 550 53.5
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.7e-151 539.7 550 53.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.7e-151 539.7 550 53.8
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.7e-151 539.7 549 53.7
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.6e-151 538.9 550 54.0
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 4.6e-151 538.9 550 53.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.0e-151 538.5 550 53.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 6.0e-151 538.5 551 53.5
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 7.9e-151 538.1 550 53.5
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-150 537.3 550 53.8
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-150 537.3 550 53.8
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.3e-150 537.3 550 53.8
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.3e-150 537.3 550 54.4
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.3e-150 537.3 550 53.3
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.8e-150 537.0 550 53.5
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.8e-150 537.0 550 53.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.3e-150 536.6 551 53.4
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 5.1e-150 535.4 550 53.3
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 5.1e-150 535.4 551 52.3
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 6.7e-150 535.0 547 53.9
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.7e-150 535.0 550 53.6
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 8.7e-150 534.6 550 53.1
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.1e-149 534.3 551 53.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.5e-149 533.9 551 53.4
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-149 533.9 551 53.4
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-149 533.9 551 53.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.9e-149 533.5 550 53.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.5e-149 533.1 550 53.1
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 2.5e-149 533.1 550 53.1
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 4.3e-149 532.3 550 52.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.3e-149 532.3 551 53.2
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 7.4e-149 531.6 550 52.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 7.4e-149 531.6 550 52.5
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.3e-148 530.8 551 52.3
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.3e-148 530.8 551 53.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.1e-148 530.0 550 53.6
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.7e-148 529.3 550 53.1
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.8e-148 528.9 551 53.0
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 4.8e-148 528.9 550 52.4
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.1e-147 527.7 551 52.6
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.1e-147 527.7 550 52.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 2.4e-147 526.6 552 52.4
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 4.0e-147 525.8 550 52.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 6.9e-147 525.0 551 52.3
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.6e-146 521.5 551 51.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.8e-145 519.2 550 52.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 3.8e-145 519.2 553 51.2
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 8.4e-145 518.1 550 52.9
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.1e-144 517.7 513 54.4
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.4e-144 516.5 535 54.6
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.1e-143 513.5 533 53.1
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.7e-142 508.1 508 53.7
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-141 506.9 550 50.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.8e-140 503.1 516 53.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.8e-140 503.1 527 53.7
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 6.9e-139 498.4 286 83.9
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.0e-138 496.9 286 85.0
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.5e-138 495.7 555 50.6
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 4.5e-138 495.7 557 49.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 7.6e-138 495.0 286 83.2
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.5e-136 490.0 286 81.8
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-134 484.6 286 81.1
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.5e-133 480.7 286 79.4
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.9e-131 471.9 550 49.1
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.5e-130 470.7 550 49.1
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.1e-127 460.3 282 76.6
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 7.9e-127 458.4 550 48.7
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.3e-126 456.8 551 46.3
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.9e-125 453.8 552 45.8
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.5e-125 453.4 551 46.5
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 9.7e-125 451.4 508 48.0
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.7e-124 449.5 549 45.7
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.0e-113 412.5 247 79.8
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.0e-109 400.6 449 48.3
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 4.8e-108 396.0 253 76.7
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.5e-106 389.8 549 41.7
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.2e-101 374.8 222 81.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.2e-100 370.5 512 41.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.7e-100 369.8 551 42.6
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.7e-100 369.8 524 40.1
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.0e-94 350.1 219 76.7
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.6e-87 327.8 187 82.4
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-86 324.3 209 73.2
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.2e-82 311.6 228 66.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.3e-81 307.4 282 55.7
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.5e-80 303.9 191 79.1
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.2e-66 258.5 228 52.6
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 2.0e-66 257.7 127 92.1
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.2e-54 216.5 180 62.8
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.1e-48 198.7 116 81.9
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.1e-48 198.7 264 41.7
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.1e-47 194.5 178 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 8.1e-47 192.6 184 50.0
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.6e-45 187.6 210 42.4
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.4e-45 187.2 267 39.0
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.9e-44 184.1 156 60.9
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 6.4e-44 183.0 177 45.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 7.8e-42 176.0 205 42.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 5.1e-41 173.3 264 37.5
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-30 138.3 96 69.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 3.1e-22 110.9 55 85.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 4.0e-22 110.5 157 44.6
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 4.9e-20 103.6 63 81.0
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 3.2e-19 100.9 84 63.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 6.9e-14 83.2 49 75.5
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 4.5e-13 80.5 70 62.9
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 5.0e-12 77.0 112 45.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 4.2e-11 73.9 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 5.1e-09 67.0 33 78.8


User provided reference genes

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