Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 1.0e-104 383.6 222 100.0
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 1.8e-69 266.5 240 62.1
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.2e-68 263.8 208 69.2
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 2.0e-68 263.1 242 62.4
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 2.6e-68 262.7 248 60.5
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 4.4e-68 261.9 208 68.8
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 4.4e-68 261.9 217 66.8
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 7.5e-68 261.2 209 68.4
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.3e-67 260.4 208 67.8
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 1.7e-67 260.0 240 62.1
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 2.0e-65 253.1 209 67.0
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 1.0e-64 250.8 209 63.6
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 1.3e-64 250.4 209 66.5
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 1.7e-64 250.0 215 63.7
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 1.9e-63 246.5 189 67.7
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 2.5e-63 246.1 208 66.8
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 4.2e-63 245.4 242 58.7
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 5.5e-63 245.0 216 63.4
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 7.2e-63 244.6 208 65.9
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 1.6e-62 243.4 208 65.9
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 2.1e-62 243.0 209 65.6
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 2.7e-62 242.7 216 61.1
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 6.1e-62 241.5 218 62.4
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 6.1e-62 241.5 215 62.3
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 1.4e-61 240.4 246 58.5
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 1.8e-61 240.0 209 62.2
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 5.2e-61 238.4 209 63.6
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 5.2e-61 238.4 215 60.9
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 8.8e-61 237.7 208 63.0
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.5e-60 236.9 246 58.1
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 2.6e-60 236.1 209 61.7
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 3.4e-60 235.7 208 62.0
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 7.5e-60 234.6 209 62.2
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 9.8e-60 234.2 210 60.5
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 1.3e-59 233.8 210 62.4
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 1.3e-59 233.8 220 59.1
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 2.2e-59 233.0 208 60.6
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 2.2e-59 233.0 208 61.5
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 3.7e-59 232.3 209 61.2
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 3.7e-59 232.3 246 57.3
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 6.3e-59 231.5 209 59.8
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 8.3e-59 231.1 209 61.2
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-58 230.7 211 60.2
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-58 230.7 211 60.2
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 1.4e-58 230.3 208 60.6
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 1.4e-58 230.3 208 60.6
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 1.8e-58 229.9 208 60.1
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 1.8e-58 229.9 210 60.5
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 1.8e-58 229.9 209 60.8
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.8e-58 229.9 209 59.8
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 3.1e-58 229.2 211 59.7
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 5.4e-58 228.4 208 60.1
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 9.2e-58 227.6 209 59.8
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.2e-57 227.3 209 60.3
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 1.6e-57 226.9 215 58.6
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 2.0e-57 226.5 208 60.1
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 2.7e-57 226.1 211 60.7
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 4.5e-57 225.3 208 60.6
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 5.9e-57 224.9 209 59.8
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.7e-57 224.6 209 59.3
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 1.9e-55 219.9 224 55.8
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 2.5e-55 219.5 231 55.0
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 3.3e-55 219.2 211 58.3
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 4.3e-55 218.8 215 58.6
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 4.3e-55 218.8 209 57.9
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 1.2e-54 217.2 209 57.4
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 3.6e-54 215.7 209 59.3
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 8.0e-54 214.5 215 57.7
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.8e-53 213.4 212 58.0
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 1.2e-52 210.7 210 58.1
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 2.0e-52 209.9 184 65.8
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 3.4e-52 209.1 214 56.1
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 4.4e-52 208.8 239 51.0
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 7.5e-52 208.0 214 56.1
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 7.5e-52 208.0 180 65.0
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 1.6e-49 200.3 210 55.2
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.6e-49 200.3 309 44.3
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.0e-49 199.9 227 53.3
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 2.0e-49 199.9 209 53.6
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 3.5e-49 199.1 238 50.8
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 1.3e-48 197.2 212 55.7
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.7e-48 196.8 212 53.8
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 2.3e-48 196.4 210 54.3
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.9e-48 195.7 206 56.3
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 5.0e-48 195.3 209 53.6
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 1.1e-47 194.1 210 55.7
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 1.9e-47 193.4 210 52.9
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 9.5e-47 191.0 211 54.5
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 2.1e-46 189.9 210 52.4
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 4.7e-46 188.7 286 43.4
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 8.0e-46 188.0 203 53.2
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 3.1e-45 186.0 207 49.8
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 5.2e-45 185.3 225 49.3
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 1.5e-44 183.7 226 48.7
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.5e-44 183.7 226 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 2.6e-44 183.0 211 50.2
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 2.6e-44 183.0 207 51.7
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 4.4e-44 182.2 226 48.2
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 1.7e-43 180.3 224 49.1
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 4.9e-43 178.7 247 44.9
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 4.9e-43 178.7 276 42.8
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 2.4e-42 176.4 184 56.5
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 9.2e-42 174.5 231 46.3
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 2.7e-41 172.9 194 54.6
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 7.8e-41 171.4 166 56.0
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.8e-41 171.4 200 52.5
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 2.3e-40 169.9 205 48.3
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.0e-40 168.7 170 55.9
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 6.6e-40 168.3 170 55.3
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 2.5e-39 166.4 217 47.0
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 7.3e-39 164.9 196 56.6
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 3.6e-38 162.5 279 41.6
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 6.2e-38 161.8 125 69.6
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 1.5e-36 157.1 218 46.3
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 2.9e-35 152.9 204 48.0
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.1e-34 151.0 170 52.9
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.4e-34 150.6 157 56.7
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 2.4e-34 149.8 176 52.8
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.9e-31 140.2 199 48.7
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 1.9e-26 123.6 169 45.0
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 9.2e-26 121.3 218 39.4
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 3.5e-25 119.4 122 54.9
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 2.1e-22 110.2 177 44.1
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 2.8e-22 109.8 106 56.6
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 1.2e-20 104.4 83 63.9
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 2.6e-20 103.2 86 61.6
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 5.8e-20 102.1 211 34.6
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 3.8e-19 99.4 83 61.4
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 4.9e-19 99.0 82 64.6
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 6.4e-19 98.6 120 53.3
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-18 96.7 93 57.0
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 4.2e-18 95.9 183 39.3
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 8.7e-16 88.2 149 41.6
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 2.8e-14 83.2 106 56.6
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 1.4e-13 80.9 147 40.1
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 5.3e-13 79.0 59 62.7
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 4.5e-12 75.9 217 28.1
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 3.8e-11 72.8 44 79.5
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 4.9e-11 72.4 56 60.7
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 8.4e-11 71.6 162 35.8
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.7e-09 66.6 56 64.3
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 4.6e-09 65.9 77 53.2
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.3e-08 64.3 56 62.5
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 6.7e-08 62.0 75 52.0
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 1.1e-07 61.2 80 50.0
Zm00001eb118520 Zea mays HOM05D004958 ORTHO05D005983 8.1e-06 55.1 52 55.8


User provided reference genes

Program Settings