Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 9.5e-45 183.0 82 100.0
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 8.1e-36 153.3 69 94.2
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 1.4e-35 152.5 70 95.7
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 1.8e-35 152.1 69 95.7
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 1.8e-35 152.1 69 94.2
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.8e-35 152.1 69 94.2
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.4e-35 151.8 69 92.8
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.4e-35 151.8 69 95.7
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.4e-35 151.8 69 92.8
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.4e-35 151.8 69 92.8
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 3.1e-35 151.4 69 92.8
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 4.0e-35 151.0 70 94.3
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 4.0e-35 151.0 69 92.8
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 5.3e-35 150.6 69 94.2
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 6.9e-35 150.2 67 95.5
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 9.0e-35 149.8 69 92.8
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 9.0e-35 149.8 69 92.8
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 9.0e-35 149.8 69 91.3
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 9.0e-35 149.8 69 91.3
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 1.2e-34 149.4 69 92.8
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.5e-34 149.1 69 91.3
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 1.5e-34 149.1 69 92.8
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 1.5e-34 149.1 69 91.3
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.5e-34 149.1 69 91.3
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.5e-34 149.1 70 90.0
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.5e-34 149.1 70 90.0
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 1.5e-34 149.1 69 91.3
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 1.5e-34 149.1 70 90.0
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 1.5e-34 149.1 70 90.0
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 2.0e-34 148.7 69 91.3
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 2.0e-34 148.7 69 91.3
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 2.0e-34 148.7 69 89.9
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 2.0e-34 148.7 69 89.9
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 2.0e-34 148.7 69 91.3
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 2.0e-34 148.7 70 90.0
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 2.6e-34 148.3 69 92.8
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 2.6e-34 148.3 69 89.9
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 3.4e-34 147.9 80 80.0
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.4e-34 147.9 69 89.9
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 3.4e-34 147.9 69 88.4
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 4.4e-34 147.5 69 89.9
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 5.8e-34 147.1 69 89.9
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 5.8e-34 147.1 68 92.6
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 7.6e-34 146.7 69 88.4
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 9.9e-34 146.4 69 88.4
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 9.9e-34 146.4 69 91.3
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 9.9e-34 146.4 69 92.8
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.7e-33 145.6 69 89.9
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 2.9e-33 144.8 69 89.9
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 3.8e-33 144.4 69 88.4
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 4.9e-33 144.1 69 85.5
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 6.4e-33 143.7 69 85.5
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 6.4e-33 143.7 69 88.4
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 8.4e-33 143.3 66 90.9
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 8.4e-33 143.3 70 85.7
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 8.4e-33 143.3 70 84.3
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 1.4e-32 142.5 70 88.6
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 1.4e-32 142.5 69 88.4
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.4e-32 142.5 69 87.0
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.9e-32 142.1 69 88.4
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.9e-32 142.1 69 87.0
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 2.4e-32 141.7 69 87.0
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 2.4e-32 141.7 69 85.5
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 4.2e-32 141.0 69 85.5
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.2e-32 141.0 69 85.5
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 1.2e-31 139.4 69 84.1
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.2e-31 139.4 67 88.1
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.6e-31 139.0 69 87.0
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 2.1e-31 138.7 69 84.1
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 2.1e-31 138.7 69 84.1
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.7e-31 138.3 67 86.6
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 4.6e-31 137.5 69 82.6
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 7.8e-31 136.7 71 84.5
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 1.3e-30 136.0 69 87.0
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 1.3e-30 136.0 69 85.5
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.3e-30 135.2 68 83.8
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 2.3e-30 135.2 72 81.9
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 3.9e-30 134.4 70 84.3
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 3.9e-30 134.4 70 84.3
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 3.9e-30 134.4 70 84.3
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 5.1e-30 134.0 70 82.9
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 5.1e-30 134.0 70 84.3
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 5.1e-30 134.0 67 79.1
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 6.6e-30 133.7 70 82.9
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 6.6e-30 133.7 70 82.9
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 1.1e-29 132.9 64 84.4
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.1e-29 132.9 66 81.8
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.1e-29 132.9 70 77.1
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.9e-29 132.1 70 81.4
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 3.3e-29 131.3 70 82.9
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 6.2e-28 127.1 55 92.7
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 6.2e-28 127.1 69 73.9
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 2.0e-26 122.1 69 71.0
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.9e-25 118.2 70 72.9
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 4.9e-25 117.5 69 78.3
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 9.3e-24 113.2 58 75.9
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.8e-22 109.0 66 65.2
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 5.6e-21 104.0 53 79.2
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 9.6e-21 103.2 59 71.2
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 1.5e-18 95.9 49 83.7
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 4.5e-18 94.4 47 87.2
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 1.0e-17 93.2 62 64.5
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 2.9e-17 91.7 49 81.6
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 3.8e-17 91.3 49 77.6
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.9e-08 62.4 24 100.0
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.9e-08 62.4 24 100.0
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 4.2e-08 61.2 24 95.8


User provided reference genes

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