Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g12880 Coffea canephora HOM05D000747 ORTHO05D044662 3.2e-37 157.9 81 100.0
Lj1C891T9 Lonicera japonica HOM05D000747 ORTHO05D001683 4.0e-19 97.8 80 58.8
Lj3C755T2 Lonicera japonica HOM05D000747 ORTHO05D001683 3.4e-18 94.7 78 60.3
Dinv40863 Davidia involucrata HOM05D000747 ORTHO05D001683 9.8e-18 93.2 79 60.8
Cc05_g15020 Coffea canephora HOM05D000747 ORTHO05D001683 4.9e-17 90.9 52 88.5
CSS0022525 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 8.3e-17 90.1 79 55.7
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.4e-16 89.4 79 59.5
CSS0037654 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.4e-16 89.4 79 59.5
Actinidia35404 Actinidia chinensis HOM05D000747 ORTHO05D001683 5.4e-16 87.4 77 54.5
QL08p003927 Quercus lobata HOM05D000747 ORTHO05D001683 2.0e-15 85.5 78 59.0
Dinv10345 Davidia involucrata HOM05D000747 ORTHO05D001683 4.6e-15 84.3 79 55.7
Nitab4.5_0004583g0110 Nicotiana tabacum HOM05D000747 ORTHO05D001683 7.8e-15 83.6 79 59.5
Nitab4.5_0007779g0030 Nicotiana tabacum HOM05D000747 ORTHO05D001683 7.8e-15 83.6 79 59.5
Duzib268G0898 Durio zibethinus HOM05D000747 ORTHO05D001683 1.0e-14 83.2 79 57.0
Gorai.002G100900 Gossypium raimondii HOM05D000747 ORTHO05D001683 1.7e-14 82.4 78 57.7
Solyc07g065630.4 Solanum lycopersicum HOM05D000747 ORTHO05D001683 2.3e-14 82.0 79 59.5
Gohir.D01G062300 Gossypium hirsutum HOM05D000747 ORTHO05D001683 3.9e-14 81.3 78 56.4
Sopen07g033840 Solanum pennellii HOM05D000747 ORTHO05D001683 3.9e-14 81.3 79 59.5
CAN.G623.17 Capsicum annuum HOM05D000747 ORTHO05D001683 5.0e-14 80.9 78 59.0
Gohir.A01G092100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 1.1e-13 79.7 78 55.1
TAR626G0075 Trochodendron aralioides HOM05D000747 ORTHO05D001683 1.9e-13 79.0 78 53.8
vmacro09645 Vaccinium macrocarpon HOM05D000747 ORTHO05D001683 1.9e-13 79.0 79 51.9
COL.COLO4_09844 Corchorus olitorius HOM05D000747 ORTHO05D001683 3.3e-13 78.2 79 55.7
Rhsim04G0012200 Rhododendron simsii HOM05D000747 ORTHO05D001683 3.3e-13 78.2 79 53.2
Atru.chr2.3699 Acer truncatum HOM05D000747 ORTHO05D001683 7.3e-13 77.0 70 58.6
Cpa.g.sc959.1 Carica papaya HOM05D000747 ORTHO05D001683 7.3e-13 77.0 79 50.6
RcHm_v2.0_Chr5g0077001 Rosa chinensis HOM05D000747 ORTHO05D001683 9.5e-13 76.6 79 53.2
Oeu005956.1 Olea europaea HOM05D000747 ORTHO05D001683 1.2e-12 76.3 79 55.7
FAN21G2236 Fragaria x ananassa HOM05D000747 ORTHO05D001683 2.1e-12 75.5 79 53.2
Thecc.07G012100 Theobroma cacao HOM05D000747 ORTHO05D001683 2.8e-12 75.1 78 52.6
Potri.011G094100 Populus trichocarpa HOM05D000747 ORTHO05D001683 3.6e-12 74.7 81 56.8
FAN16G1947 Fragaria x ananassa HOM05D000747 ORTHO05D001683 8.1e-12 73.6 79 53.2
Haze_09836 Corylus avellana HOM05D000747 ORTHO05D001683 1.8e-11 72.4 78 52.6
FvH4_3g42950 Fragaria vesca HOM05D000747 ORTHO05D001683 1.8e-11 72.4 79 51.9
FAN11G2391 Fragaria x ananassa HOM05D000747 ORTHO05D001683 1.8e-11 72.4 79 51.9
Manes.15G059000 Manihot esculenta HOM05D000747 ORTHO05D001683 1.8e-11 72.4 72 54.2
Prupe.6G024400 Prunus persica HOM05D000747 ORTHO05D001683 1.8e-11 72.4 79 50.6
Oeu005482.1 Olea europaea HOM05D000747 ORTHO05D001683 2.3e-11 72.0 79 55.7
TWI38G1048 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 3.1e-11 71.6 71 60.6
FAN25G0789 Fragaria x ananassa HOM05D000747 ORTHO05D001683 4.0e-11 71.2 79 51.9
Cfa016908 Carpinus fangiana HOM05D000747 ORTHO05D001683 5.2e-11 70.9 59 62.7
CiPaw.11G204500 Carya illinoinensis HOM05D000747 ORTHO05D001683 5.2e-11 70.9 79 51.9
Eucgr.F02042 Eucalyptus grandis HOM05D000747 ORTHO05D001683 5.2e-11 70.9 79 49.4
DCAR_017075 Daucus carota HOM05D000747 ORTHO05D001683 1.2e-10 69.7 72 50.0
CiPaw.12G138800 Carya illinoinensis HOM05D000747 ORTHO05D001683 3.4e-10 68.2 76 51.3
Potri.001G368600 Populus trichocarpa HOM05D000747 ORTHO05D001683 3.4e-10 68.2 77 51.9
MD11G1031000 Malus domestica HOM05D000747 ORTHO05D001683 4.4e-10 67.8 79 49.4
PGR083G1157 Punica granatum HOM05D000747 ORTHO05D001683 4.4e-10 67.8 79 45.6
Sabra16G0241700 Salix brachista HOM05D000747 ORTHO05D001683 5.8e-10 67.4 79 51.9
TWI38G2292 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 7.5e-10 67.0 70 52.9
TAR624G0765 Trochodendron aralioides HOM05D000747 ORTHO05D001683 7.5e-10 67.0 77 48.1
Peaxi162Scf00139g00125 Petunia axillaris HOM05D000747 ORTHO05D001683 2.9e-09 65.1 79 50.6
arahy.Tifrunner.gnm1.ann1.62V247 Arachis hypogaea HOM05D000747 ORTHO05D001683 3.7e-09 64.7 77 45.5
arahy.Tifrunner.gnm1.ann1.7NI5NY Arachis hypogaea HOM05D000747 ORTHO05D001683 3.7e-09 64.7 77 45.5
Ciclev10007219m.g Citrus clementina HOM05D000747 ORTHO05D001683 3.7e-09 64.7 80 48.8
PSO675G3434 Papaver somniferum HOM05D000747 ORTHO05D001683 1.4e-08 62.8 79 48.1
Sc03g0011480 Simmondsia chinensis HOM05D000747 ORTHO05D001683 1.4e-08 62.8 76 48.7
Phvul.002G189700 Phaseolus vulgaris HOM05D000747 ORTHO05D001683 1.9e-08 62.4 77 44.2
GSVIVG01014697001 Vitis vinifera HOM05D000747 ORTHO05D001683 1.9e-08 62.4 42 73.8
CANSAT11G0765 Cannabis sativa HOM05D000747 ORTHO05D001683 2.4e-08 62.0 82 41.5
PSO541G0267 Papaver somniferum HOM05D000747 ORTHO05D001683 2.4e-08 62.0 79 48.1
Lalb_Chr12g0209101 Lupinus albus HOM05D000747 ORTHO05D001683 3.2e-08 61.6 55 56.4
MELO3C014115.2 Cucumis melo HOM05D000747 ORTHO05D001683 4.1e-08 61.2 52 55.8
CsaV3_3G004200 Cucumis sativus L. HOM05D000747 ORTHO05D001683 4.1e-08 61.2 52 55.8
MD03G1027100 Malus domestica HOM05D000747 ORTHO05D001683 4.1e-08 61.2 79 46.8
SGA_v2.0_scaffold168G38567 Striga asiatica HOM05D000747 ORTHO05D001683 5.4e-08 60.8 79 45.6
Glyma.05G133100 Glycine max HOM05D000747 ORTHO05D001683 9.2e-08 60.1 61 52.5
Hund23101 Selenicereus undatus HOM05D000747 ORTHO05D001683 9.2e-08 60.1 70 51.4
GSVIVG01005170001 Vitis vinifera HOM05D001123 ORTHO05D044662 1.2e-07 59.7 42 69.0
ClCG10G004420 Citrullus lanatus HOM05D000747 ORTHO05D001683 1.6e-07 59.3 52 55.8
Lj4g0006906 Lotus japonicus HOM05D000747 ORTHO05D001683 2.1e-07 58.9 77 44.2
ECA240G4674 Erigeron canadensis HOM05D000747 ORTHO05D001683 2.7e-07 58.5 79 44.3
SGA_v2.0_scaffold171G38855 Striga asiatica HOM05D000747 ORTHO05D001683 2.7e-07 58.5 72 45.8
MSTRG.7001 Avicennia marina HOM05D000747 ORTHO05D001683 3.5e-07 58.2 76 46.1
THA.LOC104815693 Tarenaya hassleriana HOM05D000747 ORTHO05D001683 3.5e-07 58.2 58 46.6
Glyma.08G087600 Glycine max HOM05D000747 ORTHO05D001683 4.6e-07 57.8 61 52.5
Nn1g03156 Nelumbo nucifera HOM05D000747 ORTHO05D001683 6.0e-07 57.4 64 48.4
SalBow8G3694 Salvia bowleyana HOM05D000747 ORTHO05D001683 6.0e-07 57.4 78 42.3
SalBow8G4314 Salvia bowleyana HOM05D000747 ORTHO05D001683 6.0e-07 57.4 78 42.3
Nn1g07530 Nelumbo nucifera HOM05D000747 ORTHO05D001683 1.7e-06 55.8 58 48.3
Sp1g41460 Schrenkiella parvula HOM05D000747 ORTHO05D001683 2.3e-06 55.5 79 40.5
Duzib213G0084 Durio zibethinus HOM05D000747 ORTHO05D001683 3.9e-06 54.7 41 63.4
TPR.G31239 Trifolium pratense HOM05D000747 ORTHO05D001683 6.6e-06 53.9 78 44.9


User provided reference genes

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