Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 3.3e-110 401.7 205 100.0
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 2.7e-27 126.3 67 88.1
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 2.7e-27 126.3 65 92.3
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 2.7e-27 126.3 65 90.8
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 3.5e-27 125.9 65 90.8
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.5e-27 125.9 65 90.8
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 4.5e-27 125.6 65 90.8
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 4.5e-27 125.6 65 90.8
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 5.9e-27 125.2 65 90.8
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 5.9e-27 125.2 65 90.8
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 5.9e-27 125.2 65 90.8
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 1.0e-26 124.4 65 90.8
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 1.0e-26 124.4 65 89.2
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 1.0e-26 124.4 65 89.2
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.0e-26 124.4 65 90.8
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.0e-26 124.4 65 90.8
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.3e-26 124.0 65 89.2
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 1.3e-26 124.0 82 78.0
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.3e-26 124.0 65 90.8
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.7e-26 123.6 65 87.7
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 1.7e-26 123.6 65 87.7
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 1.7e-26 123.6 65 87.7
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.7e-26 123.6 65 87.7
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 1.7e-26 123.6 65 90.8
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 1.7e-26 123.6 65 89.2
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 2.2e-26 123.2 65 89.2
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 2.2e-26 123.2 65 89.2
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 2.2e-26 123.2 65 87.7
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 2.2e-26 123.2 65 87.7
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 2.2e-26 123.2 65 87.7
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.9e-26 122.9 65 89.2
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 2.9e-26 122.9 65 89.2
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 2.9e-26 122.9 65 89.2
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 3.8e-26 122.5 96 68.8
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 3.8e-26 122.5 66 87.9
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 3.8e-26 122.5 65 89.2
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 3.8e-26 122.5 65 87.7
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 3.8e-26 122.5 65 89.2
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 5.0e-26 122.1 65 89.2
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 6.5e-26 121.7 65 87.7
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 6.5e-26 121.7 65 87.7
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 6.5e-26 121.7 65 89.2
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 6.5e-26 121.7 65 87.7
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 8.5e-26 121.3 66 86.4
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 8.5e-26 121.3 65 89.2
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 8.5e-26 121.3 65 87.7
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 8.5e-26 121.3 65 87.7
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.1e-25 120.9 65 87.7
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 1.1e-25 120.9 65 89.2
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.1e-25 120.9 63 90.5
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 1.5e-25 120.6 63 90.5
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 1.5e-25 120.6 65 86.2
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.5e-25 120.6 65 87.7
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 1.9e-25 120.2 63 90.5
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 86.2
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 87.7
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 2.5e-25 119.8 70 85.7
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 86.2
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 86.2
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 86.2
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 86.2
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 87.7
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 87.7
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 2.5e-25 119.8 65 87.7
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 3.2e-25 119.4 99 64.6
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 3.2e-25 119.4 65 87.7
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 3.2e-25 119.4 65 87.7
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.2e-25 119.0 65 87.7
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.2e-25 119.0 65 87.7
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 5.5e-25 118.6 65 86.2
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 1.2e-24 117.5 65 87.7
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 1.6e-24 117.1 65 86.2
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.6e-24 117.1 65 86.2
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 1.6e-24 117.1 65 86.2
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 1.6e-24 117.1 65 86.2
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 2.1e-24 116.7 65 86.2
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 2.1e-24 116.7 61 88.5
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.1e-24 116.7 65 87.7
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.1e-24 116.7 65 87.7
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 2.1e-24 116.7 65 87.7
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 3.6e-24 115.9 65 84.6
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 6.1e-24 115.2 65 83.1
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 8.0e-24 114.8 65 84.6
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.8e-23 113.6 63 85.7
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 1.8e-23 113.6 65 83.1
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 3.0e-23 112.8 65 84.6
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 4.0e-23 112.5 65 81.5
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 5.2e-23 112.1 65 83.1
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 6.8e-23 111.7 87 66.7
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 8.8e-23 111.3 83 69.9
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 1.5e-22 110.5 65 81.5
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 1.5e-22 110.5 65 81.5
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 1.5e-22 110.5 65 80.0
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.5e-22 110.5 65 81.5
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 2.0e-22 110.2 65 80.0
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 2.6e-22 109.8 65 80.0
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 2.6e-22 109.8 65 81.5
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 4.4e-22 109.0 65 80.0
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 4.4e-22 109.0 65 80.0
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 4.4e-22 109.0 65 80.0
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 4.4e-22 109.0 65 80.0
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 4.4e-22 109.0 65 80.0
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 5.7e-22 108.6 65 80.0
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 7.5e-22 108.2 65 80.0
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 7.5e-22 108.2 65 80.0
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 1.7e-21 107.1 65 78.5
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 1.7e-21 107.1 65 78.5
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 1.7e-21 107.1 65 78.5
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 1.7e-21 107.1 65 78.5
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 1.7e-21 107.1 65 78.5
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 3.7e-21 105.9 65 78.5
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 3.7e-21 105.9 65 78.5
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 1.1e-20 104.4 65 76.9
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.1e-20 104.4 87 64.4
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 5.4e-20 102.1 78 66.7
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 7.0e-20 101.7 65 70.8
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 7.0e-20 101.7 65 73.8
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 1.2e-19 100.9 65 70.8
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 1.6e-19 100.5 65 69.2
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 2.7e-19 99.8 99 56.6
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 2.9e-18 96.3 116 50.0
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 5.0e-18 95.5 78 64.1
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 1.5e-17 94.0 63 66.7
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 5.5e-17 92.0 93 54.8
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 2.1e-16 90.1 63 63.5
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 1.0e-15 87.8 65 61.5
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 3.0e-15 86.3 47 87.2
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 4.0e-15 85.9 59 74.6
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.5e-14 84.0 47 87.2
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 2.2e-13 80.1 48 81.2
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 3.1e-12 76.3 91 50.5
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.9e-10 69.7 62 62.9
CAN.G304.1 Capsicum annuum HOM05D005783 ORTHO05D007042 5.0e-10 68.9 65 52.3
unitig_0.g159 Utricularia gibba HOM05D005783 ORTHO05D007042 6.6e-10 68.6 51 60.8
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 8.6e-10 68.2 66 57.6
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 1.9e-09 67.0 47 72.3
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.2e-08 64.3 30 96.7
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.8e-07 60.5 33 87.9


User provided reference genes

Program Settings