Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 4.2e-92 341.3 165 100.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.7e-70 268.9 148 87.8
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 7.0e-55 217.6 148 66.2
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.6e-54 216.5 148 68.9
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.9e-53 211.8 149 67.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 5.0e-53 211.5 149 66.4
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.5e-52 209.9 148 67.6
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.9e-52 209.5 148 65.5
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.3e-52 208.8 148 67.6
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 9.5e-52 207.2 148 65.5
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 9.5e-52 207.2 149 63.8
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.2e-51 206.8 148 65.5
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.6e-51 206.5 148 66.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 2.8e-51 205.7 148 65.5
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.1e-50 203.8 148 63.5
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.1e-50 203.8 148 64.9
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 4.0e-50 201.8 149 65.1
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 5.2e-50 201.4 148 64.9
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 5.2e-50 201.4 148 64.9
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 6.8e-50 201.1 148 64.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 6.8e-50 201.1 148 64.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.9e-50 200.7 148 66.2
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 8.9e-50 200.7 148 64.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.2e-49 200.3 148 63.5
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.2e-49 200.3 148 64.2
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 1.2e-49 200.3 148 63.5
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.5e-49 199.9 148 62.8
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.6e-49 199.1 149 63.8
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 3.4e-49 198.7 148 65.5
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 4.4e-49 198.4 148 62.2
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 5.8e-49 198.0 148 62.8
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 7.5e-49 197.6 148 63.5
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.5e-49 197.6 148 64.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 7.5e-49 197.6 148 66.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 9.8e-49 197.2 148 65.5
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 9.8e-49 197.2 148 64.9
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 9.8e-49 197.2 148 64.2
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.7e-48 196.4 148 60.8
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 2.2e-48 196.1 148 64.2
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.2e-48 196.1 148 62.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.2e-48 196.1 148 64.2
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.9e-48 194.9 148 62.8
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 4.9e-48 194.9 148 64.2
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.4e-48 194.5 148 63.5
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 6.4e-48 194.5 148 63.5
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 8.3e-48 194.1 148 62.2
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 8.3e-48 194.1 148 64.2
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 8.3e-48 194.1 148 63.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.1e-47 193.7 148 62.8
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.1e-47 193.7 148 64.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.1e-47 193.7 148 60.8
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.4e-47 193.4 148 62.8
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.9e-47 193.0 148 62.8
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.9e-47 193.0 147 61.2
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.9e-47 193.0 148 62.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.9e-47 193.0 148 60.1
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 2.4e-47 192.6 148 61.5
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.4e-47 192.6 148 62.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.2e-47 192.2 148 60.8
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 4.1e-47 191.8 148 62.2
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 4.1e-47 191.8 148 62.8
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 4.1e-47 191.8 148 62.8
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 5.4e-47 191.4 148 62.8
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 7.1e-47 191.0 148 61.5
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.1e-47 191.0 148 62.8
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 9.2e-47 190.7 148 60.8
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 9.2e-47 190.7 148 62.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-46 190.3 148 60.8
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.2e-46 190.3 148 61.5
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.2e-46 190.3 148 62.2
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.1e-46 189.5 148 62.2
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 4.6e-46 188.3 148 60.1
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.6e-46 188.3 148 62.8
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 6.0e-46 188.0 149 64.4
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.0e-46 188.0 148 59.5
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.3e-45 186.8 148 61.5
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.7e-45 186.4 148 62.2
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.7e-45 186.4 148 60.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 3.0e-45 185.7 149 63.8
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 3.9e-45 185.3 151 60.9
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 5.1e-45 184.9 155 58.7
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 8.6e-45 184.1 148 62.2
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.5e-44 183.3 149 59.7
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.9e-44 183.0 148 60.8
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.9e-44 183.0 148 61.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.5e-44 182.6 144 59.7
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.3e-44 181.8 148 62.8
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 7.3e-44 181.0 152 59.9
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.1e-43 179.5 140 60.7
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.8e-43 179.1 145 60.0
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 3.6e-43 178.7 156 57.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 6.2e-43 177.9 150 58.7
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 8.1e-43 177.6 153 59.5
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.1e-42 177.2 153 58.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.1e-42 177.2 145 58.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.4e-42 176.8 146 59.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 2.3e-42 176.0 153 58.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 2.3e-42 176.0 148 58.8
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.1e-42 175.6 127 64.6
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.0e-42 175.3 149 58.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.6e-41 172.6 153 56.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 2.6e-41 172.6 153 56.2
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.8e-41 171.4 158 56.3
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.8e-41 171.4 158 56.3
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 5.8e-41 171.4 158 56.3
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 7.6e-41 171.0 159 55.3
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.8e-40 168.7 147 56.5
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 3.8e-40 168.7 148 56.1
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.9e-39 166.4 147 55.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.9e-39 166.4 148 56.1
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.9e-39 166.4 148 53.4
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.1e-39 165.2 149 55.0
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 4.1e-39 165.2 151 54.3
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 5.4e-39 164.9 152 55.3
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 3.5e-38 162.2 174 51.1
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.5e-38 162.2 174 51.1
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.6e-38 161.8 166 51.8
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.3e-37 160.2 156 51.9
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.7e-37 159.8 148 55.4
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.9e-37 158.7 146 54.1
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 5.1e-37 158.3 151 55.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.6e-37 157.9 146 52.1
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.5e-36 156.0 146 52.1
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 4.3e-36 155.2 112 66.1
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 4.7e-35 151.8 146 52.7
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.0e-34 148.7 116 57.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 5.4e-31 138.3 173 45.1
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.1e-30 136.3 111 64.0
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 3.9e-29 132.1 110 57.3
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.4e-26 123.6 160 44.4
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 5.3e-26 121.7 162 40.1
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.3e-24 117.1 143 44.8
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.9e-24 115.9 114 54.4
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.8e-24 115.5 172 40.7
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 5.4e-23 111.7 116 50.9
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 9.3e-23 110.9 161 41.0
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.8e-21 106.7 178 37.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.1e-21 105.1 173 38.2
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.9e-20 103.2 113 47.8
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 5.3e-18 95.1 165 36.4
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.6e-17 92.8 142 38.0
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.3e-16 90.5 111 44.1
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.2e-14 84.0 52 75.0
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.7e-14 82.8 145 34.5
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 8.1e-11 71.2 142 26.1
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.1e-07 60.8 35 80.0
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.2e-07 59.3 34 82.4


User provided reference genes

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