Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11790 Coffea canephora HOM05D004885 ORTHO05D006124 1.6e-191 672.5 329 100.0
Cc07_g11780 Coffea canephora HOM05D004885 ORTHO05D006124 1.1e-59 234.6 388 41.0
Atru.chr4.1890 Acer truncatum HOM05D004885 ORTHO05D006124 1.1e-51 208.0 386 39.9
Cc11_g03220 Coffea canephora HOM05D004885 ORTHO05D006124 5.5e-51 205.7 401 37.4
Atru.chr3.136 Acer truncatum HOM05D004885 ORTHO05D006124 1.6e-50 204.1 391 39.4
FAN28G2162 Fragaria x ananassa HOM05D004885 ORTHO05D006124 4.7e-50 202.6 393 37.9
TWI09G0982 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 4.7e-50 202.6 385 36.1
Hma1.2p1_0300F.1_g118050 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 1.8e-49 200.7 385 37.4
Glyma.11G085700 Glycine max HOM05D004885 ORTHO05D006124 4.0e-49 199.5 398 35.4
arahy.Tifrunner.gnm1.ann1.E2QT4D Arachis hypogaea HOM05D004885 ORTHO05D006124 5.2e-49 199.1 396 36.1
arahy.Tifrunner.gnm1.ann1.P2H8QY Arachis hypogaea HOM05D004885 ORTHO05D006124 5.2e-49 199.1 396 36.1
FvH4_1g10450 Fragaria vesca HOM05D004885 ORTHO05D006124 5.2e-49 199.1 394 37.1
GSVIVG01026648001 Vitis vinifera HOM05D004885 ORTHO05D006124 5.2e-49 199.1 393 35.4
CSS0037388 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 8.8e-49 198.4 393 36.6
CANSAT80G0225 Cannabis sativa HOM05D004885 ORTHO05D006124 2.0e-48 197.2 386 37.8
Actinidia22902 Actinidia chinensis HOM05D004885 ORTHO05D006124 3.3e-48 196.4 374 36.1
Dinv40183 Davidia involucrata HOM05D004885 ORTHO05D006124 3.3e-48 196.4 394 38.1
Lj2g0026862 Lotus japonicus HOM05D004885 ORTHO05D006124 3.3e-48 196.4 389 35.2
Glyma.01G159000 Glycine max HOM05D004885 ORTHO05D006124 7.5e-48 195.3 391 35.3
ECA238G4274 Erigeron canadensis HOM05D004885 ORTHO05D006124 9.7e-48 194.9 384 37.0
FAN26G3465 Fragaria x ananassa HOM05D004885 ORTHO05D006124 9.7e-48 194.9 404 36.9
Dinv08168 Davidia involucrata HOM05D004885 ORTHO05D006124 1.7e-47 194.1 393 37.2
Lj4C235G2 Lonicera japonica HOM05D004885 ORTHO05D006124 2.8e-47 193.4 422 34.6
Lalb_Chr09g0324741 Lupinus albus HOM05D004885 ORTHO05D006124 3.7e-47 193.0 395 34.9
Nitab4.5_0006177g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.8e-46 190.7 392 36.7
Manes.01G155100 Manihot esculenta HOM05D004885 ORTHO05D006124 5.3e-46 189.1 400 35.8
QL04p013021 Quercus lobata HOM05D004885 ORTHO05D006124 5.3e-46 189.1 384 35.7
CiPaw.06G030500 Carya illinoinensis HOM05D004885 ORTHO05D006124 1.6e-45 187.6 392 35.7
TWI53G2056 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 1.6e-45 187.6 384 34.6
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 2.0e-45 187.2 417 35.3
VMungo1215G0823 Vigna mungo HOM05D004885 ORTHO05D006124 2.0e-45 187.2 391 34.5
Medtr5g024150 Medicago truncatula HOM05D004885 ORTHO05D006124 3.5e-45 186.4 387 35.4
Thecc.01G005900 Theobroma cacao HOM05D004885 ORTHO05D006124 3.5e-45 186.4 415 35.4
Duzib147G0190 Durio zibethinus HOM05D004885 ORTHO05D006124 1.3e-44 184.5 411 33.6
Nitab4.5_0001936g0130 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.3e-44 184.5 389 36.0
SGA_v2.0_scaffold376G50298 Striga asiatica HOM05D004885 ORTHO05D006124 1.3e-44 184.5 374 35.6
Phvul.002G116400 Phaseolus vulgaris HOM05D004885 ORTHO05D006124 1.7e-44 184.1 389 34.7
Ciclev10025327m.g Citrus clementina HOM05D004885 ORTHO05D006124 2.2e-44 183.7 389 35.2
Gohir.A07G170900 Gossypium hirsutum HOM05D004885 ORTHO05D006124 3.8e-44 183.0 409 34.2
Gohir.D07G177700 Gossypium hirsutum HOM05D004885 ORTHO05D006124 3.8e-44 183.0 409 34.2
Gorai.001G198800 Gossypium raimondii HOM05D004885 ORTHO05D006124 3.8e-44 183.0 409 34.2
Solyc02g082730.3 Solanum lycopersicum HOM05D004885 ORTHO05D006124 3.8e-44 183.0 389 35.2
Haze_00453 Corylus avellana HOM05D004885 ORTHO05D006124 5.0e-44 182.6 390 34.9
MD02G1117700 Malus domestica HOM05D004885 ORTHO05D006124 5.0e-44 182.6 401 35.7
CAN.G1238.6 Capsicum annuum HOM05D004885 ORTHO05D006124 6.5e-44 182.2 393 34.6
Sopen02g027490 Solanum pennellii HOM05D004885 ORTHO05D006124 1.5e-43 181.0 386 35.2
Migut.C00024 Erythranthe guttata HOM05D004885 ORTHO05D006124 2.5e-43 180.3 381 34.1
HanXRQChr14g0442521 Helianthus annuus HOM05D004885 ORTHO05D006124 2.5e-43 180.3 384 34.4
RcHm_v2.0_Chr2g0097311 Rosa chinensis HOM05D004885 ORTHO05D006124 2.5e-43 180.3 391 35.5
MD15G1232400 Malus domestica HOM05D004885 ORTHO05D006124 4.2e-43 179.5 402 35.6
CSS0014238 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.2e-42 177.9 398 36.2
Oeu012449.1 Olea europaea HOM05D004885 ORTHO05D006124 1.2e-42 177.9 378 36.0
Prupe.7G181700 Prunus persica HOM05D004885 ORTHO05D006124 1.2e-42 177.9 399 34.8
Sabra05G0033700 Salix brachista HOM05D004885 ORTHO05D006124 1.2e-42 177.9 429 33.6
Peaxi162Scf01051g00141 Petunia axillaris HOM05D004885 ORTHO05D006124 2.1e-42 177.2 449 32.5
Hund03605 Selenicereus undatus HOM05D004885 ORTHO05D006124 2.7e-42 176.8 394 34.3
TAR629G2658 Trochodendron aralioides HOM05D004885 ORTHO05D006124 3.6e-42 176.4 380 36.1
MD17G1057100 Malus domestica HOM05D004885 ORTHO05D006124 8.0e-42 175.3 372 36.6
Eucgr.I02226 Eucalyptus grandis HOM05D004885 ORTHO05D006124 1.0e-41 174.9 383 35.2
CsaV3_3G000260 Cucumis sativus L. HOM05D004885 ORTHO05D006124 4.0e-41 172.9 384 33.9
AUR62033951 Chenopodium quinoa HOM05D004885 ORTHO05D006124 2.6e-40 170.2 413 32.4
Aqoxy3G00208 Aquilegia oxysepala HOM05D004885 ORTHO05D006124 3.4e-40 169.9 385 34.5
AT3G06540 Arabidopsis thaliana HOM05D004885 ORTHO05D006124 7.5e-40 168.7 395 32.4
EL10Ac8g19196 Beta vulgaris HOM05D004885 ORTHO05D006124 7.5e-40 168.7 396 32.6
MD10G1065000 Malus domestica HOM05D004885 ORTHO05D006124 7.5e-40 168.7 383 34.5
AL3G17570 Arabidopsis lyrata HOM05D004885 ORTHO05D006124 1.3e-39 167.9 397 31.7
Sp3g05480 Schrenkiella parvula HOM05D004885 ORTHO05D006124 4.8e-39 166.0 396 32.1
MBI15_g00077_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 6.3e-39 165.6 403 33.0
Sed0002359 Sechium edule HOM05D004885 ORTHO05D006124 6.3e-39 165.6 374 34.5
Nn4g22671 Nelumbo nucifera HOM05D004885 ORTHO05D006124 1.1e-38 164.9 396 33.1
DCAR_006252 Daucus carota HOM05D004885 ORTHO05D006124 1.8e-38 164.1 383 33.4
PSO724G1376 Papaver somniferum HOM05D004885 ORTHO05D006124 3.1e-38 163.3 399 33.1
Carub.0003s0600 Capsella rubella HOM05D004885 ORTHO05D006124 9.1e-38 161.8 394 32.0
Rhsim08G0027300 Rhododendron simsii HOM05D004885 ORTHO05D006124 1.6e-37 161.0 363 34.2
THA.LOC104823506 Tarenaya hassleriana HOM05D004885 ORTHO05D006124 1.6e-37 161.0 393 31.8
PGSC0003DMG401001521 Solanum tuberosum HOM05D004885 ORTHO05D006124 4.5e-37 159.5 289 39.4
PSO386G0181 Papaver somniferum HOM05D004885 ORTHO05D006124 7.7e-37 158.7 389 32.4
Aa31LG5G17090 Aethionema arabicum HOM05D004885 ORTHO05D006124 1.7e-36 157.5 399 31.1
BolC5t34729H Brassica oleracea HOM05D004885 ORTHO05D006124 1.7e-36 157.5 402 31.1
Thhalv10020408m.g Eutrema salsugineum HOM05D004885 ORTHO05D006124 8.6e-36 155.2 390 32.1
Zm00001eb128670 Zea mays HOM05D004885 ORTHO05D006124 1.9e-35 154.1 386 31.3
QL04p012404 Quercus lobata HOM05D004885 ORTHO05D006124 2.5e-35 153.7 355 33.5
Sc16g0001670 Simmondsia chinensis HOM05D004885 ORTHO05D006124 2.5e-35 153.7 343 35.9
unitig_37.g12359 Utricularia gibba HOM05D004885 ORTHO05D006124 2.5e-35 153.7 367 32.4
BraA05t22870Z Brassica rapa HOM05D004885 ORTHO05D006124 4.2e-35 152.9 405 30.6
vmacro18463 Vaccinium macrocarpon HOM05D004885 ORTHO05D006124 4.2e-35 152.9 386 33.9
Zm00001eb333020 Zea mays HOM05D004885 ORTHO05D006124 9.5e-35 151.8 388 31.2
Lsat_1_v5_gn_2_73361 Lactuca sativa HOM05D004885 ORTHO05D006124 6.1e-34 149.1 364 34.3
Potri.005G028900 Populus trichocarpa HOM05D004885 ORTHO05D006124 8.0e-34 148.7 361 34.1
CDE08G1303 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 8.9e-33 145.2 390 30.0
SGA_v2.0_scaffold334G49087 Striga asiatica HOM05D004885 ORTHO05D006124 1.2e-32 144.8 283 36.4
A05p41490 Brassica napus HOM05D001895 ORTHO05D002082 4.4e-32 142.9 371 30.5
C05p60690 Brassica napus HOM05D001895 ORTHO05D002082 1.7e-31 141.0 370 30.3
Hma1.2p1_0085F.1_g044730 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 4.9e-31 139.4 262 35.9
Potri.005G030000 Populus trichocarpa HOM05D004885 ORTHO05D006124 1.1e-30 138.3 361 32.7
PGR102G0956 Punica granatum HOM05D004885 ORTHO05D006124 1.1e-30 138.3 267 33.7
BraA01t04432Z Brassica rapa HOM05D001895 ORTHO05D002082 1.0e-28 131.7 330 29.4
Ah.14g085190 Amaranthus hybridus HOM05D004885 ORTHO05D006124 2.9e-28 130.2 295 35.3
ATR0605G212 Amborella trichopoda HOM05D004885 ORTHO05D006124 5.0e-28 129.4 341 30.5
CDE06G1258 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 6.6e-28 129.0 344 29.1
Ca_24977_v3 Cicer arietinum L. HOM05D004885 ORTHO05D006124 1.9e-27 127.5 163 39.3
Cpa.g.sc365.1 Carica papaya HOM05D004885 ORTHO05D006124 2.8e-26 123.6 157 42.0
BNapus_Darmor_BZH_scaffold_118p00060 Brassica napus HOM05D001895 ORTHO05D002082 8.0e-26 122.1 335 27.2
Nitab4.5_0024681g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 5.8e-24 115.9 279 36.9
HPP92_017799 Vanilla planifolia HOM05D004885 ORTHO05D006124 2.9e-23 113.6 389 28.3
MBI01_g31987_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 8.3e-23 112.1 339 28.9
SEGI_12272 Sequoiadendron giganteum HOM05D004885 ORTHO05D006124 2.7e-21 107.1 426 27.0
AUR62029056 Chenopodium quinoa HOM05D004885 ORTHO05D006124 4.6e-21 106.3 264 29.5
Pp3c12_25630 Physcomitrium patens HOM05D004885 ORTHO05D006124 4.3e-19 99.8 354 24.6
Mapoly0007s0130 Marchantia polymorpha HOM05D004885 ORTHO05D006124 6.2e-18 95.9 404 27.0
QL09p035161 Quercus lobata HOM05D004885 ORTHO05D006124 8.9e-17 92.0 166 43.4
Psat2g149880 Pisum sativum HOM05D004885 ORTHO05D006124 1.5e-16 91.3 260 31.5
Psat0s2561g0200 Pisum sativum HOM05D004885 ORTHO05D006124 1.2e-13 81.6 174 37.4
CSS0004140 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 2.1e-13 80.9 171 39.2
AagrBONN_evm.TU.Sc2ySwM_117.1017 Anthoceros agrestis HOM05D004885 ORTHO05D006124 4.6e-13 79.7 360 25.8
Prupe.6G331900 Prunus persica HOM05D004885 ORTHO05D006124 1.0e-12 78.6 268 33.6
TPR.G39534 Trifolium pratense HOM05D004885 ORTHO05D006124 3.0e-12 77.0 162 30.2
TPR.G5176 Trifolium pratense HOM05D004885 ORTHO05D006124 1.9e-11 74.3 97 50.5
TPR.G29310 Trifolium pratense HOM05D004885 ORTHO05D006124 4.3e-11 73.2 95 51.6
CARHR081090 Cardamine hirsuta HOM05D004885 ORTHO05D006124 9.5e-11 72.0 157 35.0
TPR.G39950 Trifolium pratense HOM05D004885 ORTHO05D006124 4.7e-10 69.7 57 52.6
MELO3C013721.2 Cucumis melo HOM05D004885 ORTHO05D006124 6.8e-09 65.9 164 34.8
BcaNung06662 Brassica carinata HOM05D004885 ORTHO05D006124 1.2e-08 65.1 183 27.3
Os01g0269100 Oryza sativa ssp. japonica HOM05D004885 ORTHO05D006124 4.4e-08 63.2 158 31.0


User provided reference genes

Program Settings