Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 0.0e+00 1464.9 750 100.0
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 0.0e+00 1148.7 753 77.2
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 0.0e+00 1122.8 744 76.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 0.0e+00 1122.5 748 76.9
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1121.3 751 74.8
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 0.0e+00 1114.8 753 74.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 0.0e+00 1112.4 753 74.8
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1109.7 751 74.0
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 0.0e+00 1107.8 744 75.4
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 0.0e+00 1107.8 751 74.7
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1107.4 752 74.5
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1105.5 759 73.4
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1105.5 747 75.1
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1102.8 745 75.2
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 0.0e+00 1102.4 771 73.8
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 0.0e+00 1102.4 796 71.5
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1102.0 742 76.3
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1101.7 748 73.9
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1100.5 752 74.1
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 0.0e+00 1098.6 744 76.3
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1096.6 747 74.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1096.6 747 74.3
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1096.3 750 74.3
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 0.0e+00 1094.0 748 75.3
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 0.0e+00 1094.0 746 76.0
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1094.0 751 73.5
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 0.0e+00 1093.2 751 74.6
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1090.5 757 73.3
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1086.2 750 74.0
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 745 74.2
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 748 74.1
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 0.0e+00 1081.2 743 74.4
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 749 72.6
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 0.0e+00 1079.3 750 74.0
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 0.0e+00 1077.4 751 73.1
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 0.0e+00 1076.2 749 73.7
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1075.8 745 74.2
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 0.0e+00 1075.1 750 73.2
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 5.1e-312 1074.3 749 73.3
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.1e-312 1074.3 744 72.6
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 698 77.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.2e-308 1062.8 755 71.7
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.2e-308 1062.8 708 77.1
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 2.8e-308 1061.6 745 73.0
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 4.7e-308 1060.8 753 71.8
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 4.7e-308 1060.8 750 72.4
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.4e-307 1058.5 754 71.8
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 2.4e-307 1058.5 754 72.0
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 4.0e-307 1057.7 748 72.2
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.0e-306 1055.4 754 69.9
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 9.9e-306 1053.1 744 71.9
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 755 71.4
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 747 72.3
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 746 71.0
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 741 71.8
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 8.4e-305 1050.0 757 71.9
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 2.4e-304 1048.5 746 71.8
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 7.1e-304 1047.0 760 70.4
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 9.3e-304 1046.6 743 72.3
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 749 72.1
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 755 71.1
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 7.8e-303 1043.5 753 70.8
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 7.8e-303 1043.5 781 69.4
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 751 70.8
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 751 71.1
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 741 71.3
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 7.3e-301 1036.9 755 71.1
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.6e-300 1035.8 753 71.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.8e-300 1035.0 750 71.7
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 4.8e-300 1034.2 744 71.6
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 6.2e-300 1033.9 748 70.3
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.4e-299 1031.9 766 69.3
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.1e-299 1031.6 795 67.4
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 9.0e-299 1030.0 744 71.4
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 5.8e-298 1027.3 777 68.3
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.1e-296 1023.1 745 70.6
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 2.4e-296 1021.9 745 70.7
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.1e-295 1018.8 753 68.8
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 6.0e-295 1017.3 745 70.3
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 3.1e-291 1005.0 754 68.0
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.3e-291 1004.2 753 69.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.1e-288 993.8 753 69.6
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.7e-284 981.5 653 75.2
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.6e-282 975.3 744 67.6
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.4e-282 974.9 699 71.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 7.1e-280 967.2 704 69.6
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 9.3e-280 966.8 747 66.4
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.1e-279 965.7 747 66.7
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 5.3e-275 951.0 745 66.2
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 7.2e-272 940.6 658 72.6
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 8.7e-270 933.7 651 73.7
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 3.8e-265 918.3 830 59.0
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 5.7e-245 851.3 741 59.0
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.2e-242 843.6 537 78.0
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.2e-236 822.8 746 58.3
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 9.8e-229 797.3 711 60.5
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 7.8e-226 787.7 500 79.4
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.9e-225 785.8 555 71.5
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.4e-220 768.1 560 70.0
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 4.6e-218 761.9 603 65.7
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.3e-192 675.6 516 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.2e-180 636.7 618 54.4
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 3.3e-176 622.9 692 52.5
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.1e-174 617.8 449 70.2
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 1.1e-171 607.8 441 69.8
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 7.9e-170 601.7 421 72.2
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 8.7e-161 571.6 425 68.7
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.9e-150 535.4 422 65.2
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 4.8e-143 512.7 432 60.9
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 6.3e-143 512.3 403 64.8
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 9.1e-142 508.4 432 61.1
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.4e-129 468.0 366 65.8
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.7e-128 462.6 366 65.3
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.8e-118 431.0 499 50.9
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 2.3e-97 360.9 222 80.6
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 5.6e-91 339.7 232 74.1
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 2.0e-88 331.3 257 69.3
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.4e-70 271.2 230 61.3
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 6.2e-66 256.5 163 77.9
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 2.6e-64 251.1 168 73.2
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.4e-57 228.8 142 74.6
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.4e-57 228.8 307 45.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 6.4e-55 219.9 137 79.6
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 7.9e-53 213.0 156 66.7
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 5.1e-52 210.3 310 44.2
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 3.4e-48 197.6 132 73.5
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.7e-47 195.3 129 74.4
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 6.3e-42 176.8 101 83.2
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 7.7e-40 169.9 105 79.0
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.7e-39 168.7 158 56.3
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.5e-38 163.7 147 57.8
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.7e-37 161.4 128 66.4
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 7.9e-37 159.8 292 36.0
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.0e-35 155.2 132 65.2
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.5e-30 138.3 81 80.2
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 9.7e-27 126.3 92 69.6
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 5.3e-25 120.6 142 49.3
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 7.2e-22 110.2 132 45.5
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.3e-18 99.4 141 46.1
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 1.3e-18 99.4 70 71.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.7e-18 99.0 63 71.4
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.8e-17 95.5 63 68.3
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 1.2e-16 92.8 53 88.7
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.6e-16 91.7 79 58.2
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 2.6e-16 91.7 125 40.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 7.2e-14 83.6 52 76.9
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 1.4e-12 79.3 52 73.1
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 8.8e-12 76.6 73 57.5
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.2e-10 72.0 43 79.1
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.7e-08 65.1 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 1.9e-06 58.9 54 59.3


User provided reference genes

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