Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 2.7e-227 792.0 498 100.0
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.8e-147 525.4 510 67.1
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.1e-146 524.2 412 72.3
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.4e-146 523.9 422 70.1
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.3e-146 521.9 422 70.6
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.2e-145 520.8 422 70.1
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.3e-144 517.3 422 69.4
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.1e-143 514.2 420 70.5
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.2e-143 512.7 422 69.9
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 4.2e-143 512.3 431 68.9
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.2e-142 510.8 433 69.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 7.9e-142 508.1 433 69.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.3e-140 502.7 414 69.6
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 3.7e-139 499.2 427 70.7
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 4.8e-139 498.8 337 80.7
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.2e-137 494.2 422 70.1
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 1.0e-136 491.1 431 66.8
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 2.9e-136 489.6 429 69.7
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 3.2e-135 486.1 423 67.4
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 9.3e-135 484.6 427 67.0
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.7e-134 483.0 419 69.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 3.5e-134 482.6 428 64.3
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 4.6e-134 482.3 427 67.7
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 7.9e-134 481.5 437 63.6
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 7.9e-134 481.5 427 70.0
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.0e-133 481.1 428 66.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 1.3e-133 480.7 422 66.4
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 3.9e-133 479.2 432 65.5
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 5.1e-133 478.8 427 66.5
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 3.3e-132 476.1 427 68.9
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 4.3e-132 475.7 370 71.6
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.6e-131 473.8 434 65.0
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.6e-131 473.8 425 68.9
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.2e-129 467.6 346 74.3
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 3.4e-129 466.1 391 72.6
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.4e-129 466.1 432 64.6
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.9e-129 465.3 438 63.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.6e-129 464.9 423 66.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 7.6e-129 464.9 439 63.6
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.7e-128 463.8 439 67.9
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 1.7e-128 463.8 336 75.6
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.7e-128 463.8 427 65.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 3.8e-128 462.6 404 65.8
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 5.0e-128 462.2 457 60.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.5e-127 459.9 430 68.4
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 2.5e-127 459.9 391 69.1
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 3.5e-126 456.1 433 64.7
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.0e-125 454.5 431 61.5
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.3e-125 454.1 475 58.3
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.3e-125 454.1 409 66.0
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 7.4e-124 448.4 418 66.0
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.6e-123 447.2 426 62.9
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.7e-123 446.0 432 63.7
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.4e-122 443.4 330 75.2
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.6e-121 439.9 436 60.6
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.0e-120 438.0 430 63.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.0e-120 438.0 340 71.2
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.7e-120 437.2 382 65.7
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.9e-119 433.7 429 65.3
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 4.2e-119 432.6 442 60.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.5e-119 432.2 432 60.9
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.0e-117 426.4 332 69.9
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 6.7e-117 425.2 379 66.0
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 8.8e-117 424.9 332 69.9
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 7.4e-116 421.8 405 65.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 7.4e-116 421.8 421 61.8
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.7e-115 419.5 305 71.8
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.4e-114 417.5 448 57.4
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.4e-114 416.8 446 61.4
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 6.9e-114 415.2 379 64.1
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 9.1e-114 414.8 429 59.4
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.2e-113 414.5 330 71.8
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 4.5e-113 412.5 584 47.4
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 7.7e-113 411.8 429 59.0
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.1e-111 407.9 428 59.8
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 5.5e-111 405.6 423 60.3
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.7e-110 403.3 430 59.1
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 3.0e-109 399.8 432 56.2
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 5.1e-109 399.1 428 59.3
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 6.7e-109 398.7 331 67.1
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 6.7e-109 398.7 386 61.9
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 7.4e-108 395.2 438 56.4
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.2e-107 393.7 507 54.0
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 4.8e-107 392.5 457 55.6
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 6.3e-107 392.1 415 63.4
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.1e-106 391.3 334 69.2
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.4e-106 391.0 507 54.0
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 4.1e-106 389.4 437 57.0
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 4.1e-106 389.4 437 57.2
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.9e-104 383.3 287 70.7
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 2.5e-103 380.2 376 61.2
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 5.5e-103 379.0 293 73.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.2e-102 377.9 274 74.5
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-101 373.6 330 64.5
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.5e-100 370.9 330 64.2
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 6.3e-99 365.5 410 55.1
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.1e-98 363.2 409 55.5
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 9.1e-98 361.7 436 53.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 2.0e-97 360.5 354 66.1
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 2.5e-95 353.6 433 53.3
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 3.2e-95 353.2 430 53.7
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.2e-94 351.3 431 53.4
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 9.8e-92 341.7 439 52.4
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 9.8e-92 341.7 439 52.4
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.3e-91 341.3 356 57.9
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.2e-91 340.5 237 75.5
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 6.3e-91 339.0 248 72.6
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 5.9e-89 332.4 364 53.3
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 4.7e-86 322.8 368 57.3
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 5.2e-85 319.3 422 49.1
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 5.9e-81 305.8 436 47.7
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 8.6e-80 302.0 420 47.4
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 2.1e-78 297.4 339 51.6
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.6e-70 271.2 407 45.0
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.4e-69 268.1 395 50.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 3.0e-64 250.4 340 48.2
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.1e-63 248.4 204 61.8
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.9e-58 231.1 224 54.5
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 4.6e-57 226.5 281 52.0
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 9.9e-52 208.8 379 39.1
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 9.2e-50 202.2 331 43.2
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 3.8e-43 180.3 162 66.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.3e-40 171.8 298 38.6
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 3.0e-40 170.6 194 60.3
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.4e-26 125.2 146 57.5
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 5.5e-26 123.2 146 56.8
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 5.5e-26 123.2 146 56.8
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.3e-24 118.6 71 80.3
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.5e-15 88.6 83 59.0
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 3.4e-12 77.4 253 26.1
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.3e-11 75.5 44 77.3
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 8.5e-11 72.8 93 49.5
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 8.5e-11 72.8 93 49.5
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 1.8e-08 65.1 335 24.5
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 5.1e-08 63.5 78 62.8
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 3.3e-07 60.8 107 42.1
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.8e-06 57.8 94 44.7
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 2.8e-06 57.8 181 33.1


User provided reference genes

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