Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 6.1e-100 367.5 183 100.0
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 90.7
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 89.6
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 88.5
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 88.5
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 89.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 89.1
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 89.6
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 88.0
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 7.7e-87 323.9 182 87.4
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 86.9
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 86.9
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 89.1
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.7e-86 322.8 183 87.4
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 85.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 86.9
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.3e-86 322.4 181 87.3
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 86.9
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 86.9
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 86.9
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 86.3
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 8.6e-86 320.5 181 86.7
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 85.8
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 85.8
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 87.4
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.8
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 85.8
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 85.2
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 85.2
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 85.8
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 85.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 85.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 85.8
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 85.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 6.1e-84 314.3 190 83.7
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 84.2
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 83.6
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 83.1
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 83.1
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.5
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.0
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 83.1
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 83.1
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 83.1
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.5e-82 309.7 182 82.4
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.0
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.0e-82 309.3 181 82.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 83.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 82.9
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 82.3
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 82.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 82.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.4e-82 308.5 181 82.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.4e-82 308.5 181 82.9
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 82.0
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 82.0
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 81.8
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 81.2
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 9.8e-82 307.0 179 83.2
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 81.2
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 2.2e-81 305.8 181 81.2
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 82.0
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.8e-81 305.4 182 80.8
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 78.1
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.9
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.9
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 79.2
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 4.9e-81 304.7 182 83.5
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 79.8
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 79.8
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.1
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 82.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 4.1e-80 301.6 182 79.7
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 80.9
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 7.0e-80 300.8 183 80.9
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 9.2e-80 300.4 179 81.6
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 79.8
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.6e-79 299.7 179 81.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 80.7
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 79.2
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 79.2
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 79.2
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 78.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.5e-79 298.1 179 81.6
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.9e-79 297.7 179 80.4
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 78.7
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 7.8e-79 297.4 179 81.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 78.7
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.7
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.1
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.9e-78 295.4 179 81.0
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 6.6e-78 294.3 184 77.7
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 78.1
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 5.6e-77 291.2 228 68.0
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 9.5e-77 290.4 183 79.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.2e-76 290.0 183 78.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.2e-76 290.0 182 79.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 76.1
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 79.2
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.1e-76 289.3 183 78.1
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.0e-75 287.0 184 75.5
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.8e-75 286.2 183 76.5
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.8e-75 286.2 184 77.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.0e-75 285.4 182 76.4
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 3.0e-75 285.4 184 74.5
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 74.3
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 76.5
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 5.4e-72 274.6 219 66.7
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.2e-71 273.5 184 70.1
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.7e-71 272.3 183 70.5
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.0e-70 270.4 152 86.2
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 8.6e-70 267.3 183 69.4
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 4.3e-69 265.0 155 80.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-68 263.5 155 83.2
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.6e-68 263.1 185 70.8
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 3.6e-68 261.9 183 74.3
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 8.0e-68 260.8 183 74.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 2.0e-66 256.1 181 67.4
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 6.4e-65 251.1 152 80.9
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.3e-62 242.7 181 69.6
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 7.3e-61 237.7 188 68.6
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.6e-60 236.5 136 83.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.1e-59 232.3 181 65.7
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.9e-56 223.0 183 65.0
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.6e-55 219.9 138 76.1
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 6.6e-54 214.5 178 66.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 6.6e-54 214.5 183 63.9
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 2.5e-53 212.6 155 71.0
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.5e-50 203.4 158 63.9
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.5e-50 203.4 175 61.1
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.9e-49 199.1 152 63.8
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.1e-47 193.0 102 91.2
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.3e-46 189.5 149 63.1
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 3.3e-45 185.7 132 69.7
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.1e-44 183.0 102 85.3
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 4.7e-44 181.8 186 48.4
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 8.1e-44 181.0 158 59.5
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.8e-43 179.9 100 85.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 6.9e-43 177.9 100 87.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.2e-42 177.2 99 85.9
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 3.4e-42 175.6 106 80.2
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 7.3e-37 157.9 134 61.9
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 7.6e-34 147.9 99 71.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.9e-32 143.3 105 64.8
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 4.2e-32 142.1 81 86.4
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.0e-30 136.0 78 83.3
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 9.0e-27 124.4 81 75.3
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 9.0e-27 124.4 106 60.4
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-24 117.5 101 58.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 9.0e-19 97.8 68 61.8
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.0e-18 96.7 106 53.8
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.4e-18 95.9 52 90.4
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-16 90.9 134 45.5
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.4e-08 63.9 128 36.7
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.9e-08 63.5 81 46.9
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 1.4e-06 57.4 140 26.4
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 3.9e-06 55.8 37 67.6
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 8.8e-06 54.7 98 35.7
SMO268G0058 Selaginella moellendorffii HOM05D001645 ORTHO05D001749 8.8e-06 54.7 144 26.4


User provided reference genes

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