Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03500 Coffea canephora HOM05D000974 ORTHO05D152884 7.1e-98 360.5 175 100.0
GSVIVG01011438001 Vitis vinifera HOM05D000974 ORTHO05D002201 7.6e-15 84.7 151 41.1
Hma1.2p1_0302F.1_g118700 Hydrangea macrophylla HOM05D000974 ORTHO05D002201 4.9e-14 82.0 161 38.5
Cpa.g.c28755 Carica papaya HOM05D000974 ORTHO05D002201 8.4e-14 81.3 151 39.7
Dinv11515 Davidia involucrata HOM05D000974 ORTHO05D002201 8.4e-14 81.3 152 39.5
CSS0002918 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D002201 1.1e-13 80.9 111 45.0
CSS0023463 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D002201 1.1e-13 80.9 111 45.0
CiPaw.03G025000 Carya illinoinensis HOM05D000974 ORTHO05D002201 1.1e-13 80.9 150 38.0
CDE08G0241 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 1.1e-13 80.9 133 43.6
Potri.004G123300 Populus trichocarpa HOM05D000974 ORTHO05D002201 5.4e-13 78.6 131 39.7
Thecc.04G085000 Theobroma cacao HOM05D000974 ORTHO05D002201 7.1e-13 78.2 150 38.7
CiPaw.04G016000 Carya illinoinensis HOM05D000974 ORTHO05D002201 1.2e-12 77.4 151 37.7
COL.COLO4_10326 Corchorus olitorius HOM05D000974 ORTHO05D002201 1.2e-12 77.4 150 38.0
CDE06G0125 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 1.6e-12 77.0 133 41.4
Nitab4.5_0000568g0060 Nicotiana tabacum HOM05D000974 ORTHO05D002201 1.6e-12 77.0 151 37.7
TAR622G0930 Trochodendron aralioides HOM05D000974 ORTHO05D002201 1.6e-12 77.0 151 39.1
Sabra04G0091100 Salix brachista HOM05D000974 ORTHO05D002201 2.1e-12 76.6 131 38.9
Gohir.A05G367800 Gossypium hirsutum HOM05D000974 ORTHO05D002201 2.7e-12 76.3 150 38.0
Nn3g17283 Nelumbo nucifera HOM05D000974 ORTHO05D002201 3.5e-12 75.9 107 42.1
QL02p082558 Quercus lobata HOM05D000974 ORTHO05D002201 3.5e-12 75.9 111 44.1
TWI60G0678 Tripterygium wilfordii HOM05D000974 ORTHO05D002201 4.6e-12 75.5 112 43.8
Nitab4.5_0005644g0020 Nicotiana tabacum HOM05D000974 ORTHO05D002201 6.0e-12 75.1 151 37.1
Manes.01G092700 Manihot esculenta HOM05D000974 ORTHO05D002201 7.8e-12 74.7 131 41.2
Potri.017G085400 Populus trichocarpa HOM05D000974 ORTHO05D002201 7.8e-12 74.7 150 36.0
Duzib264G0800 Durio zibethinus HOM05D000974 ORTHO05D002201 1.0e-11 74.3 150 38.7
Gohir.D04G047500 Gossypium hirsutum HOM05D000974 ORTHO05D002201 1.7e-11 73.6 150 37.3
TWI34G1059 Tripterygium wilfordii HOM05D000974 ORTHO05D002201 1.7e-11 73.6 112 42.9
Cfa007576 Carpinus fangiana HOM05D000974 ORTHO05D002201 2.3e-11 73.2 111 41.4
CSS0033630 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D002201 3.0e-11 72.8 110 40.9
Gorai.012G052900 Gossypium raimondii HOM05D000974 ORTHO05D002201 3.0e-11 72.8 150 37.3
MD00G1125500 Malus domestica HOM05D000974 ORTHO05D002201 3.0e-11 72.8 110 41.8
Peaxi162Scf00129g00018 Petunia axillaris HOM05D000974 ORTHO05D002201 3.9e-11 72.4 111 41.4
Solyc02g088110.4 Solanum lycopersicum HOM05D000974 ORTHO05D002201 3.9e-11 72.4 132 38.6
Sopen02g032820 Solanum pennellii HOM05D000974 ORTHO05D002201 3.9e-11 72.4 132 38.6
Atru.chr8.287 Acer truncatum HOM05D000974 ORTHO05D002201 5.1e-11 72.0 151 37.1
Gohir.A09G014400 Gossypium hirsutum HOM05D000974 ORTHO05D002201 5.1e-11 72.0 150 36.0
CANSAT64G0124 Cannabis sativa HOM05D000974 ORTHO05D002201 6.6e-11 71.6 151 37.7
Haze_14510 Corylus avellana HOM05D000974 ORTHO05D002201 6.6e-11 71.6 111 40.5
Eucgr.J01358 Eucalyptus grandis HOM05D000974 ORTHO05D002201 6.6e-11 71.6 151 37.1
FvH4_6g48200 Fragaria vesca HOM05D000974 ORTHO05D002201 8.6e-11 71.2 111 40.5
FAN05G4163 Fragaria x ananassa HOM05D000974 ORTHO05D002201 8.6e-11 71.2 111 40.5
FAN09G4689 Fragaria x ananassa HOM05D000974 ORTHO05D002201 8.6e-11 71.2 111 40.5
FAN14G4918 Fragaria x ananassa HOM05D000974 ORTHO05D002201 8.6e-11 71.2 111 40.5
Gohir.D09G012900 Gossypium hirsutum HOM05D000974 ORTHO05D002201 8.6e-11 71.2 131 37.4
Gorai.006G014900 Gossypium raimondii HOM05D000974 ORTHO05D002201 8.6e-11 71.2 131 37.4
Hma1.2p1_0409F.1_g146850 Hydrangea macrophylla HOM05D000974 ORTHO05D002201 8.6e-11 71.2 111 42.3
Nn3g17284 Nelumbo nucifera HOM05D000974 ORTHO05D002201 8.6e-11 71.2 112 40.2
TAR629G3422 Trochodendron aralioides HOM05D000974 ORTHO05D002201 8.6e-11 71.2 151 37.1
FAN02G1974 Fragaria x ananassa HOM05D000974 ORTHO05D002201 1.1e-10 70.9 111 39.6
PSO017G0507 Papaver somniferum HOM05D000974 ORTHO05D002201 1.1e-10 70.9 132 37.1
PSO478G1600 Papaver somniferum HOM05D000974 ORTHO05D002201 1.1e-10 70.9 132 37.1
PGSC0003DMG400001427 Solanum tuberosum HOM05D000974 ORTHO05D002201 1.1e-10 70.9 132 37.9
RcHm_v2.0_Chr2g0167691 Rosa chinensis HOM05D000974 ORTHO05D002201 1.5e-10 70.5 111 39.6
VMungo1383G0034 Vigna mungo HOM05D000974 ORTHO05D002201 1.9e-10 70.1 131 37.4
MD09G1053000 Malus domestica HOM05D000974 ORTHO05D002201 3.3e-10 69.3 112 41.1
Prupe.3G265700 Prunus persica HOM05D000974 ORTHO05D002201 3.3e-10 69.3 111 39.6
HPP92_016907 Vanilla planifolia HOM05D000974 ORTHO05D002201 3.3e-10 69.3 112 40.2
Ciclev10011680m.g Citrus clementina HOM05D000974 ORTHO05D002201 4.3e-10 68.9 111 39.6
Glyma.18G261000 Glycine max HOM05D000974 ORTHO05D002201 4.3e-10 68.9 131 36.6
Phvul.008G037600 Phaseolus vulgaris HOM05D000974 ORTHO05D002201 4.3e-10 68.9 131 36.6
ATR0564G528 Amborella trichopoda HOM05D000974 ORTHO05D002201 5.6e-10 68.6 132 37.1
Sabra17G0075400 Salix brachista HOM05D000974 ORTHO05D002201 5.6e-10 68.6 68 50.0
TWI32G1171 Tripterygium wilfordii HOM05D000974 ORTHO05D002201 5.6e-10 68.6 112 42.0
AUR62039788 Chenopodium quinoa HOM05D000974 ORTHO05D002201 7.3e-10 68.2 112 40.2
CARHR075900 Cardamine hirsuta HOM05D000974 ORTHO05D002201 9.6e-10 67.8 113 37.2
THA.LOC104821024 Tarenaya hassleriana HOM05D000974 ORTHO05D002201 9.6e-10 67.8 111 39.6
Glyma.09G236000 Glycine max HOM05D000974 ORTHO05D002201 1.6e-09 67.0 131 35.9
AUR62034430 Chenopodium quinoa HOM05D000974 ORTHO05D002201 2.1e-09 66.6 112 40.2
Carub.0003s0101 Capsella rubella HOM05D000974 ORTHO05D002201 2.8e-09 66.2 112 37.5
Lalb_Chr02g0159301 Lupinus albus HOM05D000974 ORTHO05D002201 2.8e-09 66.2 131 36.6
Sc10g0003490 Simmondsia chinensis HOM05D000974 ORTHO05D002201 2.8e-09 66.2 135 37.0
Aqoxy3G03436 Aquilegia oxysepala HOM05D000974 ORTHO05D002201 3.6e-09 65.9 151 34.4
AL3G11110 Arabidopsis lyrata HOM05D000974 ORTHO05D002201 4.7e-09 65.5 112 36.6
Lj1g0004442 Lotus japonicus HOM05D000974 ORTHO05D002201 6.2e-09 65.1 131 35.1
Hund13200 Selenicereus undatus HOM05D000974 ORTHO05D002201 6.2e-09 65.1 133 36.8
Duzib187G0861 Durio zibethinus HOM05D000974 ORTHO05D002201 8.1e-09 64.7 137 37.2
Os08g0436000 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D002201 8.1e-09 64.7 155 35.5
Thhalv10020700m.g Eutrema salsugineum HOM05D000974 ORTHO05D002201 1.1e-08 64.3 114 35.1
Aa31LG5G12470 Aethionema arabicum HOM05D000974 ORTHO05D002201 1.4e-08 63.9 112 36.6
SGA_v2.0_scaffold10G05257 Striga asiatica HOM05D000974 ORTHO05D002201 1.4e-08 63.9 128 39.1
Rhsim08G0070500 Rhododendron simsii HOM05D000974 ORTHO05D002201 2.4e-08 63.2 132 34.8
AT3G01150 Arabidopsis thaliana HOM05D000974 ORTHO05D002201 3.1e-08 62.8 113 36.3
PSO013G0193 Papaver somniferum HOM05D000974 ORTHO05D002201 3.1e-08 62.8 111 38.7
A05p44810 Brassica napus HOM05D000974 ORTHO05D002201 4.0e-08 62.4 114 35.1
SGA_v2.0_scaffold4G02435 Striga asiatica HOM05D000974 ORTHO05D002201 4.0e-08 62.4 107 39.3
vmacro05685 Vaccinium macrocarpon HOM05D000974 ORTHO05D002201 4.0e-08 62.4 133 34.6
C09p75400 Brassica napus HOM05D000974 ORTHO05D002201 5.2e-08 62.0 114 35.1
BolC5t35120H Brassica oleracea HOM05D000974 ORTHO05D002201 5.2e-08 62.0 114 35.1
BraA05t23176Z Brassica rapa HOM05D000974 ORTHO05D002201 5.2e-08 62.0 114 35.1
Lj2g0015851 Lotus japonicus HOM05D000974 ORTHO05D002201 5.2e-08 62.0 110 38.2
Sp3g00970 Schrenkiella parvula HOM05D000974 ORTHO05D002201 5.2e-08 62.0 106 35.8
Actinidia17556 Actinidia chinensis HOM05D000974 ORTHO05D002201 6.8e-08 61.6 131 36.6
BcaC05g30386 Brassica carinata HOM05D000974 ORTHO05D002201 6.8e-08 61.6 114 35.1
BcaC05g30490 Brassica carinata HOM05D000974 ORTHO05D002201 8.9e-08 61.2 115 36.5
Ca_02899_v3 Cicer arietinum L. HOM05D000974 ORTHO05D002201 8.9e-08 61.2 131 35.1
PSO832G0839 Papaver somniferum HOM05D000974 ORTHO05D002201 8.9e-08 61.2 111 37.8
Actinidia26227 Actinidia chinensis HOM05D000974 ORTHO05D002201 1.2e-07 60.8 131 35.9
Aqoxy3G00632 Aquilegia oxysepala HOM05D000974 ORTHO05D002201 1.2e-07 60.8 131 35.1
Psat3g200200 Pisum sativum HOM05D000974 ORTHO05D002201 1.2e-07 60.8 110 36.4
DCAR_010618 Daucus carota HOM05D000974 ORTHO05D002201 1.5e-07 60.5 101 40.6
DCAR_011087 Daucus carota HOM05D000974 ORTHO05D002201 1.5e-07 60.5 129 32.6
Rhsim09G0204300 Rhododendron simsii HOM05D000974 ORTHO05D002201 1.5e-07 60.5 128 35.9
unitig_747.g21850 Utricularia gibba HOM05D000974 ORTHO05D002201 1.5e-07 60.5 102 41.2
Cc02_g01820 Coffea canephora HOM05D000974 ORTHO05D002201 2.0e-07 60.1 101 38.6
Potri.015G020800 Populus trichocarpa HOM05D000974 ORTHO05D002201 2.0e-07 60.1 127 37.0
Sabra12G0020500 Salix brachista HOM05D000974 ORTHO05D002201 2.0e-07 60.1 127 37.0
SEGI_30155 Sequoiadendron giganteum HOM05D000974 ORTHO05D002201 2.0e-07 60.1 117 38.5
MSTRG.58 Avicennia marina HOM05D000974 ORTHO05D002201 2.6e-07 59.7 128 38.3
Psat5g079400 Pisum sativum HOM05D000974 ORTHO05D002201 2.6e-07 59.7 101 40.6
Potri.012G029300 Populus trichocarpa HOM05D000974 ORTHO05D002201 2.6e-07 59.7 127 37.0
Os03g0376900 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D002201 3.4e-07 59.3 98 37.8
Ca_04290_v3 Cicer arietinum L. HOM05D000974 ORTHO05D002201 4.4e-07 58.9 132 33.3
Lju41A10G41 Lonicera japonica HOM05D000974 ORTHO05D002201 4.4e-07 58.9 120 32.5
TWI23G0688 Tripterygium wilfordii HOM05D000974 ORTHO05D002201 4.4e-07 58.9 128 36.7
Actinidia03159 Actinidia chinensis HOM05D000974 ORTHO05D002201 5.8e-07 58.5 128 35.2
DCAR_014534 Daucus carota HOM05D000974 ORTHO05D002201 5.8e-07 58.5 102 38.2
Duzib084G0975 Durio zibethinus HOM05D000974 ORTHO05D002201 5.8e-07 58.5 134 36.6
SGA_v2.0_scaffold413G51185 Striga asiatica HOM05D000974 ORTHO05D002201 5.8e-07 58.5 145 31.7
TWI39G0207 Tripterygium wilfordii HOM05D000974 ORTHO05D002201 5.8e-07 58.5 128 36.7
vmacro10110 Vaccinium macrocarpon HOM05D000974 ORTHO05D002201 5.8e-07 58.5 101 37.6
AL8G27830 Arabidopsis lyrata HOM05D000974 ORTHO05D002201 7.6e-07 58.2 100 39.0
BNapus_Darmor_BZH_scaffold_97p00100 Brassica napus HOM05D000974 ORTHO05D002201 7.6e-07 58.2 114 33.3
BolC1t05927H Brassica oleracea HOM05D000974 ORTHO05D002201 7.6e-07 58.2 114 33.3
BolC1t05931H Brassica oleracea HOM05D000974 ORTHO05D002201 7.6e-07 58.2 114 33.3
Cpa.g.sc3.57 Carica papaya HOM05D000974 ORTHO05D002201 7.6e-07 58.2 101 38.6
Eucgr.K00333 Eucalyptus grandis HOM05D000974 ORTHO05D002201 7.6e-07 58.2 112 38.4
Lsat_1_v5_gn_8_4900 Lactuca sativa HOM05D000974 ORTHO05D002201 7.6e-07 58.2 103 37.9
PSO063G6288 Papaver somniferum HOM05D000974 ORTHO05D002201 7.6e-07 58.2 101 37.6
QL09p010723 Quercus lobata HOM05D000974 ORTHO05D002201 7.6e-07 58.2 103 37.9
Aqoxy3G00631 Aquilegia oxysepala HOM05D000974 ORTHO05D002201 9.9e-07 57.8 67 47.8
TPR.G8800 Trifolium pratense HOM05D000974 ORTHO05D002201 9.9e-07 57.8 132 33.3
Glyma.06G125951 Glycine max HOM05D000974 ORTHO05D002201 1.3e-06 57.4 97 39.2
Gohir.A12G251400 Gossypium hirsutum HOM05D000974 ORTHO05D002201 1.3e-06 57.4 101 39.6
Gorai.008G270300 Gossypium raimondii HOM05D000974 ORTHO05D002201 1.3e-06 57.4 101 39.6
Oeu041345.2 Olea europaea HOM05D000974 ORTHO05D002201 1.3e-06 57.4 128 35.9
VMungo1309G0758 Vigna mungo HOM05D000974 ORTHO05D002201 1.3e-06 57.4 108 38.0
Dinv28330 Davidia involucrata HOM05D000974 ORTHO05D002201 1.7e-06 57.0 101 38.6
ECA233G4294 Erigeron canadensis HOM05D000974 ORTHO05D002201 1.7e-06 57.0 103 36.9
Lj1g0000917 Lotus japonicus HOM05D000974 ORTHO05D002201 1.7e-06 57.0 101 38.6
RcHm_v2.0_Chr1g0380181 Rosa chinensis HOM05D000974 ORTHO05D002201 1.7e-06 57.0 122 36.1
SalBow1G1768 Salvia bowleyana HOM05D000974 ORTHO05D002201 1.7e-06 57.0 69 47.8
arahy.Tifrunner.gnm1.ann1.N493LC Arachis hypogaea HOM05D000974 ORTHO05D002201 2.2e-06 56.6 101 38.6
arahy.Tifrunner.gnm1.ann1.Q9F21C Arachis hypogaea HOM05D000974 ORTHO05D002201 2.2e-06 56.6 101 38.6
EL10Ac2g02997 Beta vulgaris HOM05D000974 ORTHO05D002201 2.2e-06 56.6 111 35.1
FAN06G1357 Fragaria x ananassa HOM05D000974 ORTHO05D002201 2.2e-06 56.6 122 36.1
MD07G1285900 Malus domestica HOM05D000974 ORTHO05D002201 2.2e-06 56.6 111 37.8
Cfa016369 Carpinus fangiana HOM05D000974 ORTHO05D002201 2.9e-06 56.2 101 37.6
ClCG00G002840 Citrullus lanatus HOM05D000974 ORTHO05D002201 2.9e-06 56.2 103 36.9
Ciclev10006435m.g Citrus clementina HOM05D000974 ORTHO05D006133 2.9e-06 56.2 101 37.6
Haze_00119 Corylus avellana HOM05D000974 ORTHO05D002201 2.9e-06 56.2 101 37.6
MELO3C005872.2 Cucumis melo HOM05D000974 ORTHO05D002201 2.9e-06 56.2 103 36.9
CsaV3_5G000650 Cucumis sativus L. HOM05D000974 ORTHO05D002201 2.9e-06 56.2 103 36.9
Glyma.04G238000 Glycine max HOM05D000974 ORTHO05D002201 2.9e-06 56.2 101 37.6
Lalb_Chr23g0271501 Lupinus albus HOM05D000974 ORTHO05D002201 2.9e-06 56.2 101 37.6
CiPaw.05G257200 Carya illinoinensis HOM05D000974 ORTHO05D002201 3.8e-06 55.8 101 37.6
Duzib068G0199 Durio zibethinus HOM05D000974 ORTHO05D002201 3.8e-06 55.8 132 34.8
Gohir.D12G252200 Gossypium hirsutum HOM05D000974 ORTHO05D002201 3.8e-06 55.8 101 38.6
TPR.G33570 Trifolium pratense HOM05D000974 ORTHO05D002201 3.8e-06 55.8 123 34.1
arahy.Tifrunner.gnm1.ann1.0CS5BR Arachis hypogaea HOM05D000974 ORTHO05D002201 4.9e-06 55.5 89 38.2
arahy.Tifrunner.gnm1.ann1.WY06FR Arachis hypogaea HOM05D000974 ORTHO05D002201 4.9e-06 55.5 89 38.2
COL.COLO4_38260 Corchorus olitorius HOM05D000974 ORTHO05D002201 4.9e-06 55.5 128 36.7
FvH4_7g31120 Fragaria vesca HOM05D000974 ORTHO05D002201 4.9e-06 55.5 122 35.2
FAN06G2074 Fragaria x ananassa HOM05D000974 ORTHO05D002201 4.9e-06 55.5 122 35.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.9e-06 55.5 122 35.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.9e-06 55.5 122 35.2
Gohir.A08G097724 Gossypium hirsutum HOM05D000974 ORTHO05D002201 4.9e-06 55.5 128 35.2
Lj3A909T47 Lonicera japonica HOM05D000974 ORTHO05D002201 4.9e-06 55.5 140 34.3
Manes.14G008196 Manihot esculenta HOM05D000974 ORTHO05D002201 4.9e-06 55.5 133 35.3
Mapoly0003s0022 Marchantia polymorpha HOM05D000974 ORTHO05D002201 4.9e-06 55.5 135 34.1
Phvul.009G054151 Phaseolus vulgaris HOM05D000974 ORTHO05D002201 4.9e-06 55.5 91 40.7
Rhsim10G0036800 Rhododendron simsii HOM05D000974 ORTHO05D002201 4.9e-06 55.5 66 48.5
SEGI_26116 Sequoiadendron giganteum HOM05D000974 ORTHO05D002201 4.9e-06 55.5 101 38.6
THA.LOC104811931 Tarenaya hassleriana HOM05D000974 ORTHO05D002201 4.9e-06 55.5 104 37.5
TAR375G0118 Trochodendron aralioides HOM05D000974 ORTHO05D002201 4.9e-06 55.5 133 34.6
CSS0036199 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D002201 6.4e-06 55.1 62 50.0
HanXRQChr08g0216681 Helianthus annuus HOM05D000974 ORTHO05D002201 6.4e-06 55.1 101 37.6
Medtr3g090960 Medicago truncatula HOM05D000974 ORTHO05D002201 6.4e-06 55.1 89 41.6
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 6.4e-06 55.1 101 37.6
Sed0026580 Sechium edule HOM05D000974 ORTHO05D002201 6.4e-06 55.1 124 34.7
TPR.G17290 Trifolium pratense HOM05D000974 ORTHO05D002201 6.4e-06 55.1 89 41.6
Aa31LG3G9300 Aethionema arabicum HOM05D000974 ORTHO05D002201 8.4e-06 54.7 98 36.7
AT5G53180 Arabidopsis thaliana HOM05D000974 ORTHO05D002201 8.4e-06 54.7 98 36.7
Ca_12682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D002201 8.4e-06 54.7 90 41.1
Ca_12687_v3 Cicer arietinum L. HOM05D000974 ORTHO05D002201 8.4e-06 54.7 90 41.1
Gorai.004G115700 Gossypium raimondii HOM05D000974 ORTHO05D002201 8.4e-06 54.7 101 36.6


User provided reference genes

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