Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03060 Coffea canephora HOM05D003321 ORTHO05D005161 5.2e-190 667.5 333 100.0
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 4.6e-170 601.3 319 92.5
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 5.1e-169 597.8 319 91.5
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 3.3e-168 595.1 319 90.0
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 7.3e-168 594.0 319 90.0
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.6e-167 592.8 319 90.9
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 8.1e-167 590.5 319 90.3
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 5.2e-166 587.8 319 89.3
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 5.2e-166 587.8 319 89.3
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 3.4e-165 585.1 319 89.0
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 3.4e-165 585.1 319 88.4
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 3.7e-164 581.6 319 88.4
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 1.4e-163 579.7 319 88.1
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 1.9e-163 579.3 319 87.8
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 5.4e-163 577.8 329 87.5
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 5.4e-163 577.8 319 86.5
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 9.2e-163 577.0 319 87.8
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 9.2e-163 577.0 319 86.5
TWI60G1051 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 1.6e-162 576.2 319 86.5
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 2.1e-162 575.9 329 86.0
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.5e-162 575.1 319 86.5
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.5e-162 575.1 319 86.8
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 3.5e-162 575.1 319 86.8
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 6.0e-162 574.3 319 86.8
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 1.3e-161 573.2 319 86.8
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 1.7e-161 572.8 319 87.1
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 3.0e-161 572.0 329 85.4
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 6.6e-161 570.9 319 86.2
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 1.1e-160 570.1 319 86.8
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 1.1e-160 570.1 319 86.5
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 1.5e-160 569.7 319 85.0
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 7.3e-160 567.4 319 86.2
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 1.6e-159 566.2 319 85.6
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 2.1e-159 565.8 319 85.3
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 2.8e-159 565.5 319 84.0
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 3.6e-159 565.1 319 85.6
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.6e-159 565.1 321 86.6
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 3.6e-159 565.1 319 85.9
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 4.7e-159 564.7 319 85.6
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 4.7e-159 564.7 319 85.9
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 4.7e-159 564.7 319 85.9
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 6.2e-159 564.3 319 84.3
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 8.1e-159 563.9 319 86.2
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 1.1e-158 563.5 319 85.6
arahy.Tifrunner.gnm1.ann1.QM6JB0 Arachis hypogaea HOM05D003321 ORTHO05D005161 1.4e-158 563.1 319 84.0
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 2.4e-158 562.4 319 83.4
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 2.4e-158 562.4 319 83.7
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.1e-158 562.0 335 83.6
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 4.0e-158 561.6 319 83.1
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 5.2e-158 561.2 319 84.0
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 6.8e-158 560.8 343 81.9
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 6.8e-158 560.8 319 84.6
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.5e-157 559.7 319 87.5
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 1.5e-157 559.7 319 85.9
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 1.5e-157 559.7 329 83.0
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 4.4e-157 558.1 301 90.0
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 4.4e-157 558.1 301 91.7
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 5.8e-157 557.8 329 82.7
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 9.9e-157 557.0 329 81.8
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 4.9e-156 554.7 319 82.1
MD17G1047600 Malus domestica HOM05D003321 ORTHO05D005161 4.9e-156 554.7 319 84.0
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 6.4e-156 554.3 319 82.8
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 1.1e-155 553.5 319 81.8
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 1.1e-155 553.5 319 83.4
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.4e-155 553.1 319 84.3
TAR622G1354 Trochodendron aralioides HOM05D003321 ORTHO05D005161 3.2e-155 552.0 319 85.3
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 4.2e-155 551.6 319 82.4
Sc17g0001240 Simmondsia chinensis HOM05D003321 ORTHO05D005161 7.1e-155 550.8 319 83.7
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 1.2e-154 550.1 319 83.1
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 1.6e-154 549.7 319 83.4
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 1.6e-154 549.7 319 81.2
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 2.7e-154 548.9 319 84.0
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 3.5e-154 548.5 319 83.4
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 3.5e-154 548.5 319 83.4
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 6.0e-154 547.7 319 83.1
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 7.8e-154 547.4 319 82.8
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 1.7e-153 546.2 319 81.2
Potri.017G078500 Populus trichocarpa HOM05D003321 ORTHO05D005161 1.7e-153 546.2 319 83.7
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 2.3e-153 545.8 319 82.8
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 3.0e-153 545.4 319 82.8
PSO591G0346 Papaver somniferum HOM05D003321 ORTHO05D005161 3.0e-153 545.4 319 82.1
PSO832G3448 Papaver somniferum HOM05D003321 ORTHO05D005161 3.0e-153 545.4 319 82.1
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 3.9e-153 545.0 319 82.8
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 5.1e-153 544.7 319 84.3
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 8.7e-153 543.9 319 82.4
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 1.5e-152 543.1 319 83.1
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.5e-152 543.1 319 80.9
Potri.004G124000 Populus trichocarpa HOM05D003321 ORTHO05D005161 3.3e-152 542.0 319 82.8
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 4.3e-152 541.6 319 82.1
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 4.3e-152 541.6 319 82.1
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 4.3e-152 541.6 319 82.1
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 5.6e-152 541.2 316 81.3
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 5.6e-152 541.2 319 80.9
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 9.6e-152 540.4 319 81.8
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 1.6e-151 539.7 319 81.5
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 1.6e-151 539.7 317 82.6
vmacro05729 Vaccinium macrocarpon HOM05D003321 ORTHO05D005161 2.8e-151 538.9 286 92.3
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 6.2e-151 537.7 316 80.7
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 8.1e-151 537.3 319 81.2
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.1e-150 537.0 319 80.3
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 1.4e-150 536.6 319 81.5
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 1.8e-150 536.2 319 81.2
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 4.0e-150 535.0 311 84.2
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 5.3e-150 534.6 319 81.2
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.3e-150 534.6 319 79.9
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.9e-150 534.3 319 81.2
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 2.6e-149 532.3 319 81.5
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 2.6e-149 532.3 319 80.6
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 2.6e-149 532.3 319 81.5
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 9.9e-149 530.4 315 82.5
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.9e-149 530.4 319 80.3
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 4.9e-148 528.1 319 80.3
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 1.4e-147 526.6 320 80.6
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 2.4e-147 525.8 301 84.7
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 7.8e-146 520.8 319 79.0
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 2.3e-145 519.2 319 79.3
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 5.6e-144 514.6 319 77.4
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 2.8e-143 512.3 300 83.3
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 2.8e-143 512.3 304 80.6
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 1.2e-141 506.9 320 76.6
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 2.6e-141 505.8 297 81.5
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 5.8e-141 504.6 301 81.1
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 7.6e-141 504.2 318 76.1
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 1.3e-140 503.4 319 77.1
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 1.7e-140 503.1 319 76.5
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 4.6e-138 495.0 319 76.8
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.5e-136 489.2 319 72.7
PSO384G3545 Papaver somniferum HOM05D003321 ORTHO05D005161 7.4e-136 487.6 319 74.0
SEGI_27754 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 3.1e-134 482.3 319 71.8
SEGI_13423 Sequoiadendron giganteum HOM05D003321 ORTHO05D005161 4.5e-133 478.4 319 71.8
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 1.2e-130 470.3 319 69.6
SGA_v2.0_scaffold205G41773 Striga asiatica HOM05D003321 ORTHO05D005161 2.5e-128 462.6 301 76.7
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 9.0e-126 454.1 318 68.6
Pp3c9_4400 Physcomitrium patens HOM05D003321 ORTHO05D005161 1.2e-125 453.8 313 67.4
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 2.0e-125 453.0 319 67.1
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 3.4e-125 452.2 297 77.8
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 6.5e-124 448.0 313 66.1
Sabra17G0069700 Salix brachista HOM05D003321 ORTHO05D005161 3.5e-122 442.2 301 75.4
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.4e-118 430.3 314 65.0
SMO356G0125 Selaginella moellendorffii HOM05D003321 ORTHO05D005161 9.7e-112 407.5 319 61.4
CSS0018217 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 6.1e-98 361.7 202 86.6
CSS0041948 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 6.1e-98 361.7 202 86.6
Rhsim05G0106500 Rhododendron simsii HOM05D003321 ORTHO05D005161 3.3e-96 355.9 346 59.5
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 5.7e-96 355.1 201 87.1
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 1.0e-92 344.4 194 88.7
Cfa007905 Carpinus fangiana HOM05D003321 ORTHO05D005161 1.1e-86 324.3 177 91.0
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 7.7e-85 318.2 204 76.5
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 4.1e-78 295.8 161 85.7
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 9.5e-75 284.6 172 81.4
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 3.7e-71 272.7 313 47.3
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 5.9e-69 265.4 221 58.8
PRCOL_00006095 Prasinoderma coloniale HOM05D003321 ORTHO05D005161 5.4e-62 242.3 306 41.5
Thhalv10008631m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 9.8e-56 221.5 152 69.7
Oeu033336.1 Olea europaea HOM05D003321 ORTHO05D005161 3.2e-54 216.5 204 59.8
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 4.3e-51 206.1 326 35.0
Lj1g0009615 Lotus japonicus HOM05D003321 ORTHO05D005161 2.1e-50 203.8 181 58.6
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.4e-46 191.0 159 62.3
Cfa021690 Carpinus fangiana HOM05D003321 ORTHO05D005161 6.8e-41 172.2 332 29.2
BcaB01g02066 Brassica carinata HOM05D003321 ORTHO05D005161 2.0e-40 170.6 222 48.6
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 8.7e-36 155.2 94 74.5
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 8.1e-34 148.7 90 82.2
Lsat_1_v5_gn_6_49381 Lactuca sativa HOM05D003321 ORTHO05D033839 7.6e-32 142.1 83 78.3
Lsat_1_v5_gn_5_101681 Lactuca sativa HOM05D003321 ORTHO05D000541 5.4e-30 136.0 109 66.1
CDE05G3094 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 8.1e-26 122.1 70 82.9
PGSC0003DMG400001413 Solanum tuberosum HOM05D003321 ORTHO05D394828 8.1e-26 122.1 128 57.8
BolC2t11553H Brassica oleracea HOM05D003321 ORTHO05D033839 1.9e-22 110.9 89 61.8
Actinidia36023 Actinidia chinensis HOM05D003321 ORTHO05D013943 3.2e-22 110.2 64 76.6
Aqoxy3G00239 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 9.3e-22 108.6 123 48.0
ECA236G4825 Erigeron canadensis HOM05D003321 ORTHO05D186893 6.0e-21 105.9 290 27.6
ECA234G4637 Erigeron canadensis HOM05D003321 ORTHO05D008593 4.3e-19 99.8 118 47.5
HanXRQChr04g0102631 Helianthus annuus HOM05D003321 ORTHO05D019677 9.6e-19 98.6 61 78.7
HanXRQChr17g0550931 Helianthus annuus HOM05D003321 ORTHO05D224906 1.3e-18 98.2 71 70.4
HanXRQChr06g0173771 Helianthus annuus HOM05D003321 ORTHO05D019677 1.9e-11 74.3 41 80.5
Aqoxy3G03302 Aquilegia oxysepala HOM05D003321 ORTHO05D019677 4.8e-10 69.7 70 47.1
HanXRQChr01g0022931 Helianthus annuus HOM05D003321 ORTHO05D019677 1.4e-09 68.2 42 76.2
TAR371G0510 Trochodendron aralioides HOM05D003321 ORTHO05D414592 7.2e-06 55.8 37 70.3


User provided reference genes

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