Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.2e-147 526.6 269 100.0
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 2.0e-128 462.6 269 85.9
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.6e-127 457.2 270 85.2
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 9.5e-126 453.8 269 84.0
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.1e-124 450.3 270 83.7
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 2.3e-124 449.1 268 82.1
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 2.0e-123 446.0 282 81.2
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.3e-122 443.4 268 82.5
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.9e-121 439.5 270 81.9
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 4.6e-120 434.9 270 80.4
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.9e-118 429.5 270 80.7
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 4.7e-117 424.9 272 79.4
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.2e-117 424.5 272 78.3
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 8.1e-117 424.1 270 78.9
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 1.4e-116 423.3 270 78.1
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.3e-116 422.5 270 77.8
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 5.2e-116 421.4 269 77.7
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 5.2e-116 421.4 269 79.2
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.2e-115 420.2 269 78.8
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.2e-115 420.2 272 77.6
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 2.0e-115 419.5 270 77.4
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 2.0e-115 419.5 269 77.0
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.6e-115 419.1 271 78.6
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 2.6e-115 419.1 270 77.0
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.6e-115 419.1 272 77.2
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.4e-115 418.7 270 77.8
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.4e-115 418.7 270 77.0
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 3.4e-115 418.7 269 77.7
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 4.4e-115 418.3 271 77.5
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 5.8e-115 417.9 269 78.1
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.8e-115 417.9 270 78.5
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 5.8e-115 417.9 270 77.8
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 7.6e-115 417.5 272 77.2
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 9.9e-115 417.2 269 78.1
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.7e-114 416.4 270 76.3
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 2.2e-114 416.0 269 77.0
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.9e-114 415.6 271 79.0
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 3.8e-114 415.2 269 78.8
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 3.8e-114 415.2 269 77.0
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 4.9e-114 414.8 269 77.7
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 4.9e-114 414.8 269 78.8
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 8.4e-114 414.1 271 76.8
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 8.4e-114 414.1 269 79.9
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.1e-113 413.7 270 76.3
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.1e-113 413.7 271 76.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.4e-113 413.3 273 77.3
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 2.4e-113 412.5 271 77.9
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 2.4e-113 412.5 272 75.7
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 3.2e-113 412.1 270 77.4
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 4.1e-113 411.8 256 82.8
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 4.1e-113 411.8 269 77.7
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 5.4e-113 411.4 295 72.9
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-112 409.8 269 76.2
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-112 409.8 270 75.6
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-112 409.8 270 75.6
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.1e-112 409.5 271 76.8
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 2.1e-112 409.5 271 76.0
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.1e-112 409.5 270 77.0
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-111 406.8 272 75.7
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.3e-111 406.0 271 75.6
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 3.0e-111 405.6 270 75.6
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.9e-111 405.2 273 75.8
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 5.1e-111 404.8 271 75.6
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 5.1e-111 404.8 273 74.4
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 6.6e-111 404.4 270 75.6
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 6.6e-111 404.4 292 69.9
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 8.6e-111 404.1 281 73.3
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.6e-111 404.1 270 74.4
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.6e-111 404.1 272 75.0
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.1e-110 403.7 270 75.6
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 2.5e-110 402.5 271 76.0
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.3e-110 402.1 270 74.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.3e-110 402.1 270 74.1
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 7.3e-110 401.0 270 74.1
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 7.3e-110 401.0 282 73.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.6e-110 400.6 272 74.6
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.6e-110 400.6 272 74.6
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.6e-109 399.8 269 75.8
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.6e-109 399.8 276 75.7
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 2.1e-109 399.4 271 74.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.1e-109 399.4 260 78.5
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-109 399.1 285 73.7
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.6e-109 398.7 284 72.2
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 3.1e-108 395.6 297 69.0
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.9e-108 394.4 270 73.7
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 8.9e-108 394.0 270 73.0
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 8.9e-108 394.0 253 79.4
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.5e-107 393.3 271 72.7
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 2.0e-107 392.9 270 72.6
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.6e-107 392.5 270 73.0
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 4.4e-107 391.7 271 73.8
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.8e-106 388.7 266 74.8
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.1e-105 387.1 305 65.6
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.1e-105 387.1 305 65.6
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.2e-105 385.6 270 73.3
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 5.4e-105 384.8 342 60.5
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 9.3e-105 384.0 329 62.9
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 9.3e-105 384.0 272 71.3
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 9.3e-105 384.0 272 71.3
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 9.3e-105 384.0 269 73.6
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.0e-103 380.6 272 72.8
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.0e-103 379.0 273 71.1
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 5.6e-102 374.8 273 71.8
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.8e-101 372.5 269 69.1
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.8e-100 369.8 272 73.2
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 5.3e-100 368.2 272 69.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.0e-99 366.3 272 69.1
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 2.6e-99 365.9 236 79.2
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.3e-98 363.6 272 72.8
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 2.9e-98 362.5 233 77.3
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.9e-98 362.5 273 70.3
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.1e-97 360.5 272 70.6
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.4e-97 359.4 272 70.6
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 9.3e-97 357.5 272 72.8
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 6.7e-95 351.3 317 61.2
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.7e-95 351.3 331 59.8
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.1e-94 350.5 230 76.1
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.5e-94 350.1 230 76.5
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.9e-94 349.7 272 65.8
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.8e-93 345.9 275 66.5
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.8e-92 343.2 275 68.0
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.5e-91 340.1 231 73.2
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.0e-91 339.7 230 75.2
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 4.9e-90 335.1 232 73.3
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 8.4e-90 334.3 266 64.7
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.2e-88 330.5 230 73.0
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 2.1e-88 329.7 278 65.1
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 6.7e-87 324.7 269 66.9
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 2.8e-85 319.3 358 52.0
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 1.8e-84 316.6 263 64.6
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 4.9e-82 308.5 266 61.7
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 2.1e-80 303.1 337 51.6
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 3.5e-80 302.4 231 70.1
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 8.7e-79 297.7 233 67.8
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.3e-78 295.4 276 58.0
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.6e-77 293.5 283 57.2
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-76 290.4 231 68.0
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.4e-76 289.7 175 82.9
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 3.4e-75 285.8 228 65.8
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 7.2e-73 278.1 270 57.4
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 3.4e-67 259.2 181 72.4
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.4e-67 259.2 258 56.6
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.5e-67 258.8 201 66.2
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.0e-66 257.7 275 53.1
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 6.5e-66 255.0 173 71.1
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 9.4e-65 251.1 172 72.7
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.8e-63 246.9 162 78.4
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.3e-62 242.7 260 50.8
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 4.4e-62 242.3 260 51.5
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.8e-61 239.6 175 68.6
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 6.3e-61 238.4 263 52.1
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.7e-58 230.3 213 62.9
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.7e-58 230.3 130 86.9
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 3.2e-57 226.1 161 69.6
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 3.6e-56 222.6 169 68.0
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 3.9e-55 219.2 160 69.4
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.1e-54 217.6 254 52.8
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.7e-54 214.5 201 58.7
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 2.0e-51 206.8 153 68.6
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 1.5e-46 190.7 237 47.3
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.8e-44 183.7 150 65.3
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.8e-44 183.7 133 73.7
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.1e-44 183.0 182 54.9
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.3e-44 182.2 125 71.2
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.3e-42 177.6 232 45.7
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.5e-42 174.9 162 58.0
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.8e-37 159.1 139 59.7
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 9.1e-36 154.8 270 41.5
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.5e-30 137.5 88 79.5
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.1e-28 129.4 91 74.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.5e-25 120.2 74 79.7
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.3e-25 119.4 149 51.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.0e-23 112.8 64 82.8
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 4.9e-21 105.9 150 44.0
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.3e-21 105.1 67 76.1
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 2.4e-20 103.6 74 71.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.6e-11 72.8 137 38.0
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 9.5e-09 65.1 42 76.2
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 9.5e-09 65.1 125 35.2
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 2.1e-08 63.9 41 70.7
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.1e-07 60.1 34 82.4


User provided reference genes

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