Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 8.3e-120 433.7 219 100.0
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 1.8e-106 389.4 204 98.0
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 3.4e-105 385.2 204 97.5
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 2.2e-88 329.3 177 96.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 2.8e-67 259.2 209 65.6
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.8e-65 251.5 214 62.1
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.5e-63 246.1 206 63.1
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 5.5e-63 245.0 206 65.0
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 5.5e-63 245.0 206 63.1
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 2.1e-62 243.0 206 63.1
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 3.9e-61 238.8 205 61.5
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 4.3e-60 235.3 205 61.0
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 9.6e-60 234.2 211 59.2
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 8.2e-59 231.1 217 58.5
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.1e-58 230.7 206 60.2
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.8e-58 229.9 209 61.2
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 6.9e-58 228.0 206 60.7
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 9.0e-58 227.6 206 59.2
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 9.0e-58 227.6 213 57.3
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 1.3e-56 223.8 217 58.5
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.7e-56 223.4 203 59.6
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 2.2e-56 223.0 206 58.7
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 2.2e-56 223.0 204 58.8
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 2.9e-56 222.6 205 58.0
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.1e-55 220.7 216 56.9
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.4e-55 220.3 214 56.5
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.9e-55 219.9 238 51.7
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 3.2e-55 219.2 238 51.3
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 3.2e-55 219.2 207 58.5
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 3.2e-55 219.2 245 51.0
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.2e-55 219.2 227 53.3
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 4.2e-55 218.8 207 56.5
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 4.2e-55 218.8 212 59.4
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 7.2e-55 218.0 204 57.4
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 9.3e-55 217.6 214 57.5
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.6e-54 216.9 234 52.6
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 1.6e-54 216.9 217 54.4
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 4.6e-54 215.3 215 55.8
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 6.1e-54 214.9 213 54.5
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 6.1e-54 214.9 232 55.2
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 6.1e-54 214.9 206 57.3
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 2.3e-53 213.0 220 52.3
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.3e-53 213.0 205 55.6
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 3.0e-53 212.6 207 56.5
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 5.1e-53 211.8 237 50.2
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 5.1e-53 211.8 205 55.6
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 8.7e-53 211.1 185 61.1
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 1.9e-52 209.9 236 51.7
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 2.5e-52 209.5 207 54.6
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 4.3e-52 208.8 237 50.2
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 5.7e-52 208.4 205 56.1
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 9.7e-52 207.6 205 56.6
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 1.6e-51 206.8 237 50.2
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 2.2e-51 206.5 233 50.2
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 2.8e-51 206.1 238 49.2
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 3.7e-51 205.7 214 52.3
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 6.3e-51 204.9 234 49.6
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 8.2e-51 204.5 181 58.0
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 1.1e-50 204.1 215 50.2
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.8e-50 203.4 146 66.4
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 4.1e-50 202.2 135 71.9
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 4.1e-50 202.2 211 52.6
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 5.3e-50 201.8 232 50.0
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 6.9e-50 201.4 180 56.7
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 9.1e-50 201.1 238 47.5
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.2e-49 200.7 216 53.2
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 1.5e-49 200.3 144 68.8
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 3.4e-49 199.1 141 64.5
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 4.5e-49 198.7 239 48.5
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 4.5e-49 198.7 239 48.5
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 4.5e-49 198.7 239 48.5
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.0e-48 197.6 204 55.9
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 5.0e-48 195.3 239 49.0
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 8.5e-48 194.5 231 48.1
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 8.5e-48 194.5 248 48.8
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 8.5e-48 194.5 214 53.7
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.2e-47 192.6 178 57.3
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 4.2e-47 192.2 172 59.3
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 7.9e-46 188.0 205 52.7
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 1.8e-45 186.8 177 55.4
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 2.3e-45 186.4 147 61.9
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 2.3e-45 186.4 172 57.6
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 3.9e-45 185.7 147 61.9
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.9e-45 185.7 209 51.7
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 6.7e-45 184.9 206 51.0
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 2.0e-44 183.3 186 53.8
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 3.3e-44 182.6 253 42.7
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 5.7e-44 181.8 172 56.4
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 7.4e-44 181.4 172 55.8
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 7.4e-44 181.4 162 54.9
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 9.7e-44 181.0 126 69.0
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.3e-43 180.6 163 58.9
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.7e-43 180.3 172 56.4
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.2e-43 179.9 191 51.3
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.2e-43 179.9 180 53.3
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.8e-43 179.5 213 48.4
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 8.2e-43 177.9 210 47.6
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.4e-42 177.2 177 55.9
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.7e-40 170.2 246 45.1
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 5.0e-40 168.7 209 47.8
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.4e-39 167.2 230 45.7
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.6e-38 163.7 185 52.4
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 6.1e-38 161.8 185 47.6
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.2e-37 158.7 139 56.8
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 8.8e-37 157.9 198 46.0
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.0e-36 156.8 139 56.1
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 5.7e-36 155.2 172 51.7
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 1.4e-34 150.6 150 52.0
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 1.8e-34 150.2 202 43.1
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.3e-34 148.7 196 46.4
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.3e-34 148.7 196 46.4
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 9.1e-34 147.9 154 51.3
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.2e-33 147.5 204 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 7.7e-33 144.8 196 43.4
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 4.2e-31 139.0 147 49.7
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 9.7e-28 127.9 165 44.2
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 2.8e-27 126.3 112 59.8
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.8e-26 123.6 128 48.4
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 9.1e-26 121.3 153 45.8
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 4.2e-23 112.5 79 70.9
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 2.0e-20 103.6 206 34.5
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.2e-16 90.1 186 29.0
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 4.7e-14 82.4 142 36.6
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 2.0e-09 67.0 191 29.3
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 2.7e-09 66.6 54 61.1
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 2.7e-09 66.6 53 62.3
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 3.8e-08 62.8 47 63.8


User provided reference genes

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