Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 4194.4 2203 100.0
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2567.0 2206 65.2
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 2506.1 2217 63.0
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2496.5 2229 62.1
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 2494.9 2217 62.7
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2445.6 2194 62.3
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2422.1 2230 61.6
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2408.6 2248 60.5
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 2397.1 2192 61.3
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 2395.9 2206 61.4
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 2369.3 2235 60.1
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2367.0 2214 60.0
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2282.3 2216 59.6
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2264.2 2224 59.1
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2242.6 2220 58.3
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2238.0 2235 58.2
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2227.6 2229 58.0
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2216.4 2331 55.9
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2208.3 2217 57.4
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2206.0 2231 57.5
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2204.5 2239 56.6
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2202.6 2228 57.5
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2201.0 2226 58.7
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2192.9 2287 56.4
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2189.5 1715 68.0
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2185.2 2246 56.8
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2174.4 2229 57.5
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2172.9 2268 56.6
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2170.6 2277 55.9
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2164.4 2277 55.7
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2164.0 2231 56.3
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2154.4 2226 56.5
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2152.1 2218 56.8
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2146.7 2227 55.8
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2142.9 2286 55.0
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2136.3 2226 55.8
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 2126.7 2222 55.9
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2100.9 2223 55.7
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 2097.8 2199 55.9
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2068.1 2227 54.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2066.6 2231 55.0
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2050.8 2225 54.0
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2041.5 2238 54.1
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2040.8 2281 53.7
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2038.8 2227 54.0
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2036.9 2231 54.5
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2025.4 2268 53.4
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2019.6 2227 53.1
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2004.2 2238 53.4
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1999.2 2217 53.4
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1994.5 2227 53.5
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1983.0 2191 53.4
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1981.8 2219 53.4
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1981.8 2246 52.6
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1978.4 2166 54.3
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1976.8 2201 54.1
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1976.1 2240 53.1
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1971.4 2234 52.5
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1971.1 2232 53.0
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1961.8 2266 52.5
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1953.7 2274 51.8
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1938.7 2273 51.3
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1934.1 2181 52.2
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1902.9 2079 54.2
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1897.9 1922 55.6
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1879.0 2037 54.4
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1875.9 2037 54.0
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1852.8 2156 51.8
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1834.3 2232 50.0
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1826.2 2229 49.7
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1819.7 2117 51.5
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1813.9 2234 49.0
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1813.1 2145 50.7
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1805.4 2228 49.2
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1798.1 2190 49.7
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1796.2 1389 66.9
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1792.7 1389 66.9
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1773.8 2232 48.4
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1772.7 2213 48.4
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1769.2 2224 48.5
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1763.8 2224 48.5
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1755.7 2231 48.5
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1748.4 2222 48.2
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1738.4 2242 47.9
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1734.9 2230 47.8
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1731.8 2244 47.7
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1629.4 2366 44.4
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1624.0 1391 61.6
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1601.6 1247 66.3
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1519.2 1424 58.8
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1510.0 2225 44.3
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1453.0 2240 43.6
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1444.9 2270 43.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1270.8 1465 52.7
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1201.4 1608 48.6
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1171.0 1385 54.2
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1078.5 1364 50.1
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 4.1e-307 1059.3 816 68.8
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.2e-276 957.2 1313 46.0
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 8.2e-276 955.3 1242 50.1
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.2e-263 914.8 1241 47.9
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 3.5e-258 896.7 1121 46.7
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.4e-235 820.8 938 56.8
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 8.4e-196 689.5 2163 29.9
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 4.1e-190 670.6 822 56.2
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.0e-189 668.3 822 56.2
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.9e-181 640.2 951 44.2
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-173 614.4 486 64.4
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 6.3e-159 567.0 857 50.5
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 6.1e-146 523.9 2274 27.1
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.8e-140 504.6 1197 34.6
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 2.5e-131 475.3 1066 37.9
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 4.0e-129 468.0 426 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 1.1e-126 459.9 1380 28.6
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.6e-125 456.1 652 44.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 1.4e-113 416.4 348 63.5
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 4.4e-112 411.4 278 71.6
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.4e-105 389.8 903 35.7
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 1.2e-93 350.1 456 53.1
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 3.4e-88 332.0 1877 23.7
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 5.5e-86 324.7 454 52.9
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.1e-78 300.4 300 55.3
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.0e-76 293.9 215 67.4
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.0e-76 292.4 383 41.8
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.1e-69 269.6 163 81.6
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 1.3e-66 260.4 453 46.4
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 3.1e-65 255.8 331 46.8
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.7e-59 235.0 153 75.8
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-55 223.0 328 41.5
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 7.0e-49 201.4 706 35.1
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 7.0e-49 201.4 191 67.5
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 2.6e-43 183.0 137 66.4
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 3.5e-40 172.6 330 36.1
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.7e-40 171.4 103 79.6
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.1e-38 167.5 240 46.7
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.8e-36 157.9 211 43.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.2e-34 153.3 552 28.8
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-32 147.5 115 61.7
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-29 137.1 180 50.0
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.8e-29 136.3 336 34.5
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.8e-29 136.3 222 35.1
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.2e-24 120.9 102 67.6
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 5.6e-22 112.1 68 79.4
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.4e-17 97.4 215 37.2
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.0e-15 89.7 72 72.2
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.8e-13 83.2 371 31.0
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.0e-11 77.0 133 31.6
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 3.7e-10 72.8 199 29.6
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.3e-10 71.6 121 43.8
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 4.1e-09 69.3 61 63.9
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 7.1e-09 68.6 67 56.7
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 1.6e-08 67.4 60 66.7
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.7e-08 66.6 332 31.6
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 3.0e-07 63.2 87 48.3
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 2.5e-06 60.1 51 64.7
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.3e-06 59.3 58 46.6


User provided reference genes

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