Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.2e-238 828.6 419 100.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 9.9e-130 467.6 406 60.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.1e-124 448.0 397 58.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 9.0e-123 444.5 410 56.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 9.3e-120 434.5 394 58.1
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 7.4e-117 424.9 390 54.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.1e-115 421.0 411 54.7
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 5.3e-115 418.7 397 55.2
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.7e-113 413.7 390 55.1
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.8e-113 412.5 402 55.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 6.0e-111 405.2 366 57.7
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.9e-111 404.8 366 57.1
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 9.7e-109 397.9 402 53.5
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.8e-105 386.0 338 58.6
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.4e-104 384.0 401 51.1
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.4e-104 384.0 401 51.4
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 3.2e-104 382.9 354 55.9
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.2e-103 380.9 397 52.1
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 3.6e-103 379.4 400 51.5
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 7.9e-103 378.3 397 51.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.0e-102 376.3 400 50.8
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.3e-101 372.9 399 50.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 4.3e-101 372.5 400 51.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 8.2e-100 368.2 401 50.1
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.3e-97 360.9 370 52.4
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.4e-96 357.5 350 52.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 7.2e-96 355.1 402 49.5
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 7.2e-96 355.1 403 49.1
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 6.7e-94 348.6 411 47.4
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 4.4e-93 345.9 402 46.5
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 5.7e-93 345.5 402 47.8
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.3e-92 344.4 402 47.8
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 2.8e-92 343.2 405 47.2
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.8e-92 342.4 358 50.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.4e-91 340.9 350 52.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.8e-91 340.5 357 51.0
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 3.1e-91 339.7 400 45.2
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 6.9e-91 338.6 401 47.6
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.6e-90 336.7 402 47.5
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.5e-90 335.9 370 50.3
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.9e-90 335.5 370 50.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 7.7e-90 335.1 369 49.9
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.3e-89 334.3 369 49.9
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.9e-88 330.5 409 45.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 3.2e-88 329.7 404 46.0
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.2e-88 329.3 402 46.0
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 7.2e-88 328.6 388 47.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 2.7e-87 326.6 402 45.0
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.7e-87 326.6 395 46.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.1e-87 325.5 369 48.8
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 6.1e-87 325.5 350 49.1
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.0e-86 324.7 402 46.0
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 5.7e-85 318.9 341 51.3
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 7.0e-83 312.0 351 50.1
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.0e-82 310.5 398 45.0
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.9e-82 308.9 345 49.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 5.9e-82 308.9 341 47.2
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.3e-81 307.8 345 49.9
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.7e-81 307.4 351 47.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.2e-81 307.0 359 46.0
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.9e-81 306.6 361 46.5
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 3.8e-81 306.2 357 47.3
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.5e-81 305.4 341 49.3
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.5e-80 303.5 404 42.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 4.2e-80 302.8 349 48.1
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 5.5e-80 302.4 361 47.6
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 7.2e-80 302.0 361 44.6
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.6e-79 300.8 399 40.6
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.7e-79 300.1 348 46.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.0e-78 298.1 400 43.2
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.5e-77 294.3 350 47.1
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.6e-77 293.5 349 47.0
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.6e-77 293.5 310 50.6
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.3e-77 293.1 301 55.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.3e-76 291.2 392 41.8
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.3e-76 291.2 355 46.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.8e-76 290.0 353 45.6
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.7e-76 289.7 356 45.8
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 9.1e-75 285.0 355 45.6
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.6e-74 284.3 355 45.6
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.6e-74 284.3 369 45.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.7e-73 280.8 307 49.2
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 2.2e-73 280.4 368 44.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 7.2e-72 275.4 366 42.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.6e-71 274.2 250 56.4
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.1e-67 260.0 364 41.5
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.1e-67 259.6 308 46.1
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 9.1e-67 258.5 358 43.6
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.5e-66 256.1 221 60.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 7.2e-64 248.8 350 40.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 7.2e-64 248.8 311 46.6
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.2e-63 248.1 356 43.3
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.6e-56 222.6 237 48.1
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 9.5e-56 221.9 235 49.4
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 9.5e-56 221.9 350 38.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.2e-55 221.5 350 38.6
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.4e-54 218.0 311 42.8
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.2e-54 216.1 358 36.6
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 2.4e-51 207.2 355 35.2
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.1e-51 206.5 257 44.4
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.0e-49 201.8 205 53.2
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 2.8e-47 193.7 395 32.7
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.3e-44 184.9 188 50.5
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 3.2e-43 180.3 406 31.0
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 3.9e-33 146.7 284 34.2
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 4.7e-31 139.8 158 52.5
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.8e-28 130.2 117 51.3
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.5e-24 118.2 151 47.7
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 7.3e-24 115.9 100 49.0
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 4.0e-22 110.2 89 59.6
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 4.9e-20 103.2 85 57.6
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 5.8e-13 79.7 82 47.6
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 7.6e-13 79.3 245 30.2
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.9e-08 64.7 47 61.7
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.0e-06 55.8 201 26.4


User provided reference genes

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