Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 5.7e-108 394.4 225 100.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.6e-94 349.7 230 87.0
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.0e-93 347.1 230 84.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.2e-92 343.6 230 84.3
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.7e-91 339.7 230 83.0
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.2e-91 339.3 229 86.0
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.4e-90 335.9 230 83.5
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 5.4e-90 334.7 235 83.8
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.4e-90 334.7 231 82.3
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.4e-90 334.7 231 82.3
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.4e-90 334.7 230 83.0
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.4e-90 334.7 225 83.6
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 9.2e-90 334.0 230 83.9
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 9.2e-90 334.0 246 77.2
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.2e-89 333.6 230 81.7
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 3.5e-89 332.0 225 77.8
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 4.6e-89 331.6 233 83.3
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 4.6e-89 331.6 230 80.9
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.0e-88 330.5 230 83.0
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.0e-88 328.9 230 80.0
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.9e-88 328.6 230 81.7
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 6.6e-88 327.8 230 81.7
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.6e-88 327.8 231 81.8
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.1e-87 327.0 230 82.2
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.1e-87 327.0 225 82.7
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.5e-87 325.9 232 82.8
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.3e-87 325.1 231 82.3
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 5.6e-87 324.7 230 82.2
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.6e-87 324.7 231 82.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 5.6e-87 324.7 230 81.7
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 7.3e-87 324.3 231 80.5
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.2e-86 323.6 231 80.5
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.6e-86 323.2 230 81.3
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.6e-86 323.2 230 80.0
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 3.6e-86 322.0 232 81.5
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 3.6e-86 322.0 229 81.7
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 4.7e-86 321.6 231 79.7
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.1e-86 320.9 231 81.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.1e-85 320.5 231 81.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 3.1e-85 318.9 231 81.8
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.0e-85 318.5 225 81.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 4.0e-85 318.5 232 79.3
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 4.0e-85 318.5 230 80.9
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 6.8e-85 317.8 231 79.2
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 6.8e-85 317.8 230 81.3
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 6.8e-85 317.8 232 79.7
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 8.9e-85 317.4 229 80.3
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-84 316.6 232 79.3
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.5e-84 316.6 232 79.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.5e-84 316.6 232 79.3
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-84 316.6 232 78.9
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.0e-84 316.2 243 77.4
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 2.0e-84 316.2 233 79.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 2.0e-84 316.2 233 79.4
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.0e-84 316.2 230 81.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 79.3
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 80.6
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 3.4e-84 315.5 232 78.4
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.4e-84 315.5 231 79.2
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.4e-84 315.5 225 81.8
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.4e-84 315.5 231 80.5
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.4e-84 315.1 232 78.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 5.8e-84 314.7 233 78.5
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 7.5e-84 314.3 231 78.4
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 9.8e-84 313.9 232 79.3
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 9.8e-84 313.9 232 79.3
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-83 313.5 225 80.0
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.2e-83 312.8 232 79.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.9e-83 312.4 232 78.9
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.9e-83 312.4 232 78.9
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.9e-83 312.4 232 78.9
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 4.9e-83 311.6 233 79.0
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 6.4e-83 311.2 230 79.1
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.4e-83 311.2 233 79.0
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.3e-83 310.8 235 78.3
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-82 310.1 232 78.9
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.4e-82 310.1 233 78.1
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.9e-82 309.7 232 78.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-82 309.7 232 78.4
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.9e-82 309.7 229 79.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.4e-82 309.3 233 80.3
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.4e-82 309.3 230 77.0
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.2e-82 308.9 231 79.7
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 4.1e-82 308.5 230 78.3
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 5.4e-82 308.1 230 77.4
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 7.1e-82 307.8 230 78.3
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 7.1e-82 307.8 232 77.6
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.7e-81 305.8 230 78.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 7.8e-81 304.3 235 76.2
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.0e-80 303.9 230 77.0
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.3e-80 302.8 229 77.3
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.9e-80 302.0 230 71.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 5.1e-80 301.6 230 71.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.5e-79 300.1 232 77.2
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.9e-79 299.7 233 77.3
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 5.6e-79 298.1 230 77.0
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 9.5e-79 297.4 231 78.4
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.1e-78 296.2 221 79.2
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.6e-78 295.4 236 75.4
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.2e-78 294.7 230 76.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 8.1e-78 294.3 230 76.5
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.1e-77 293.9 230 75.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.8e-77 293.1 235 76.2
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.1e-77 292.4 284 60.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.8e-77 291.2 225 69.8
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 8.9e-77 290.8 226 76.5
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.4e-76 288.5 232 70.7
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 5.8e-76 288.1 232 75.4
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 9.9e-76 287.3 230 75.2
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.3e-75 287.0 251 65.7
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.7e-75 286.6 225 70.7
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.4e-75 284.3 232 75.0
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.9e-74 283.1 227 73.6
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.4e-74 282.7 229 66.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-74 282.7 225 74.7
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 7.1e-74 281.2 227 75.3
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 7.1e-74 281.2 233 74.2
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 7.1e-74 281.2 233 74.2
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 9.2e-74 280.8 232 73.7
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-73 280.0 225 74.2
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.1e-73 279.6 239 67.4
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 7.8e-73 277.7 230 70.9
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 7.8e-73 277.7 233 71.2
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.8e-73 277.7 225 73.8
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-72 276.9 225 73.3
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.0e-72 275.8 233 72.1
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 6.6e-72 274.6 233 66.1
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-71 273.1 217 77.4
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.9e-71 273.1 227 72.7
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 2.4e-69 266.2 225 72.0
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.2e-68 263.8 230 69.6
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.5e-68 263.5 225 70.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.5e-68 263.5 229 72.5
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 9.9e-68 260.8 229 71.6
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 2.3e-64 249.6 230 68.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 3.9e-64 248.8 230 68.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.5e-63 246.9 271 59.8
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 3.2e-58 229.2 234 67.1
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.1e-57 226.5 187 75.9
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.1e-57 226.5 189 75.7
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-52 210.7 247 52.2
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-52 210.3 226 63.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-51 206.8 187 73.3
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 4.9e-51 205.3 150 82.0
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.9e-49 198.0 156 78.2
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 5.6e-47 191.8 232 56.9
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.8e-46 189.5 240 55.0
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-45 186.8 108 85.2
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-45 186.4 108 84.3
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.6e-44 183.0 108 83.3
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.0e-43 181.0 119 78.2
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-43 180.3 120 78.3
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 3.8e-43 179.1 119 78.2
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.2e-42 176.0 150 74.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.3e-39 166.0 96 88.5
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.3e-38 164.1 93 91.4
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.0e-36 156.8 138 71.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.6e-36 156.4 97 83.5
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 2.5e-34 149.8 119 68.1
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.6e-30 137.1 81 82.7
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 6.3e-30 135.2 76 85.5
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 5.3e-29 132.1 89 77.5
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.4e-26 124.0 225 42.7
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 4.2e-26 122.5 176 53.4
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 7.2e-26 121.7 97 72.2
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.2e-26 121.7 175 48.0
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.3e-24 116.7 97 67.0
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.0e-24 116.3 78 76.9
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.4e-20 102.8 222 37.8
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.4e-15 85.9 44 90.9
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 7.4e-15 85.1 71 64.8
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.4e-13 80.9 72 66.7
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.2e-12 77.8 53 71.7
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.9e-10 70.5 83 47.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.1e-09 67.0 82 52.4
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.2e-06 57.0 83 45.8


User provided reference genes

Program Settings