Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 1.4e-81 307.4 332 100.0
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 4.9e-55 219.2 332 72.3
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 1.4e-54 217.6 334 82.6
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 1.2e-53 214.5 333 84.1
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 2.0e-53 213.8 333 84.7
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 3.5e-53 213.0 333 84.4
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 3.9e-52 209.5 328 82.9
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 8.6e-52 208.4 333 83.8
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 1.1e-51 208.0 328 82.0
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 1.9e-51 207.2 329 81.8
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 2.5e-51 206.8 329 83.0
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 3.3e-51 206.5 328 81.1
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 5.6e-51 205.7 332 81.0
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 7.3e-51 205.3 333 83.5
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 2.8e-50 203.4 328 82.9
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 3.6e-50 203.0 329 84.5
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 8.0e-50 201.8 329 83.3
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 8.0e-50 201.8 328 82.3
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.4e-49 201.1 329 66.9
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 1.4e-49 201.1 328 82.0
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 8.9e-49 198.4 327 81.3
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 8.9e-49 198.4 328 81.4
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 8.9e-49 198.4 320 83.8
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 5.8e-48 195.7 330 80.9
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 7.5e-48 195.3 325 82.8
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 7.5e-48 195.3 316 84.2
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 9.8e-48 194.9 327 80.7
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 1.7e-47 194.1 329 83.0
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 1.7e-47 194.1 332 81.3
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 2.2e-47 193.7 329 82.1
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 2.2e-47 193.7 329 82.1
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 2.2e-47 193.7 329 83.0
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 3.7e-47 193.0 332 78.0
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 6.4e-47 192.2 328 74.7
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 1.1e-46 191.4 328 79.6
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.4e-46 191.0 316 84.2
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 2.4e-46 190.3 328 80.5
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 4.1e-46 189.5 327 79.2
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 5.4e-46 189.1 330 77.0
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 1.2e-45 188.0 334 77.8
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 1.6e-45 187.6 332 78.0
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 3.5e-45 186.4 332 77.4
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 3.5e-45 186.4 321 77.6
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 6.0e-45 185.7 327 82.3
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 1.0e-44 184.9 333 79.6
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.3e-44 183.7 321 80.7
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 3.9e-44 183.0 317 82.0
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.1e-43 181.4 332 79.2
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.1e-43 181.4 332 79.2
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.1e-43 181.4 328 80.2
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 1.5e-43 181.0 331 77.9
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 1.9e-43 180.6 328 72.0
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 4.3e-43 179.5 328 71.3
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 9.5e-43 178.3 322 80.7
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 1.2e-42 177.9 329 81.2
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.6e-42 177.6 329 81.2
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 1.6e-42 177.6 328 73.8
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 3.6e-42 176.4 324 77.2
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 6.2e-42 175.6 328 73.8
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.4e-41 174.5 328 81.1
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 1.8e-41 174.1 333 77.8
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 2.3e-41 173.7 328 81.1
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.3e-41 173.7 321 75.7
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 3.1e-41 173.3 327 76.1
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 8.9e-41 171.8 325 79.7
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 4.4e-40 169.5 312 83.3
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 5.8e-40 169.1 325 76.9
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 2.9e-39 166.8 328 71.6
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 4.9e-39 166.0 328 77.7
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 3.2e-38 163.3 373 64.3
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 1.2e-37 161.4 328 69.5
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 2.1e-37 160.6 323 77.7
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 3.5e-37 159.8 326 74.8
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 7.8e-37 158.7 326 74.5
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 1.3e-36 157.9 325 73.2
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 1.9e-35 154.1 327 45.0
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 3.3e-35 153.3 333 68.2
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 3.3e-35 153.3 325 75.7
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 2.8e-34 150.2 322 69.6
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 2.8e-34 150.2 302 82.1
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 2.8e-34 150.2 315 76.2
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 3.6e-34 149.8 335 75.5
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 1.1e-33 148.3 326 72.4
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 1.8e-33 147.5 326 64.7
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 4.0e-33 146.4 323 65.9
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 2.2e-31 140.6 330 64.5
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 8.4e-31 138.7 329 63.8
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.9e-30 137.5 326 63.8
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 2.4e-30 137.1 326 70.6
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 2.4e-30 137.1 297 79.1
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 7.1e-30 135.6 326 65.0
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 3.5e-29 133.3 80 78.8
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 3.5e-29 133.3 86 70.9
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 1.1e-27 128.3 286 81.8
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 3.3e-27 126.7 279 80.6
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 7.3e-27 125.6 320 52.8
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 1.6e-26 124.4 87 65.5
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 8.1e-26 122.1 325 67.7
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 8.1e-26 122.1 325 67.7
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 1.1e-25 121.7 325 67.7
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 3.1e-25 120.2 325 67.4
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 9.9e-24 115.2 293 37.9
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 7.1e-22 109.0 65 75.4
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 7.1e-22 109.0 321 43.6
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 1.0e-20 105.1 325 58.2
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.7e-20 104.4 321 68.5
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.3e-19 100.1 315 69.2
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.1e-17 93.6 58 70.7
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 4.0e-17 93.2 57 73.7
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 7.6e-16 89.0 63 61.9
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.6e-13 81.3 58 63.8
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 1.5e-11 74.7 86 44.2
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 8.1e-10 68.9 44 70.5
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 4.0e-09 66.6 42 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 5.3e-09 66.2 74 43.2
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 5.3e-09 66.2 87 44.8
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.2e-08 65.1 44 70.5
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 3.4e-08 63.5 65 43.1
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 2.2e-07 60.8 62 45.2
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 4.9e-07 59.7 61 44.3
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 6.4e-07 59.3 61 42.6
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 6.4e-07 59.3 62 43.5
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 6.4e-07 59.3 62 43.5
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 6.4e-07 59.3 62 43.5
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 6.4e-07 59.3 62 41.9
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 6.4e-07 59.3 61 42.6
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 1.1e-06 58.5 61 42.6
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 1.1e-06 58.5 59 40.7
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 1.4e-06 58.2 64 35.9
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 1.9e-06 57.8 61 42.6
CANSAT25G2219 Cannabis sativa HOM05D002901 ORTHO05D003183 3.2e-06 57.0 56 37.5
Hma1.2p1_2405F.1_g321440 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 3.2e-06 57.0 53 39.6
Lsat_1_v5_gn_2_2920 Lactuca sativa HOM05D002901 ORTHO05D003183 3.2e-06 57.0 56 39.3
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 4.2e-06 56.6 59 40.7
AUR62011331 Chenopodium quinoa HOM05D001557 ORTHO05D001299 4.2e-06 56.6 61 41.0
Hma1.2p1_0244F.1_g101100 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 4.2e-06 56.6 53 39.6
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 4.2e-06 56.6 61 41.0
SEGI_01405 Sequoiadendron giganteum HOM05D001557 ORTHO05D001299 4.2e-06 56.6 60 41.7
vmacro19244 Vaccinium macrocarpon HOM05D002901 ORTHO05D003183 4.2e-06 56.6 56 39.3
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 41.0
AUR62034384 Chenopodium quinoa HOM05D002901 ORTHO05D003183 5.5e-06 56.2 55 41.8
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 5.5e-06 56.2 59 39.0
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 5.5e-06 56.2 57 40.4
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 5.5e-06 56.2 61 39.3
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 7.1e-06 55.8 63 38.1
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 9.3e-06 55.5 61 39.3
DCAR_018383 Daucus carota HOM05D002901 ORTHO05D003183 9.3e-06 55.5 59 37.3
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 9.3e-06 55.5 59 40.7
Nitab4.5_0006035g0020 Nicotiana tabacum HOM05D002901 ORTHO05D003183 9.3e-06 55.5 55 40.0
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 9.3e-06 55.5 62 40.3
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 9.3e-06 55.5 61 39.3


User provided reference genes

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