Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g04950 Coffea canephora HOM05D003188 ORTHO05D003602 2.1e-76 288.9 137 100.0
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 2.3e-27 125.9 136 52.9
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 5.2e-27 124.8 136 52.2
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 7.4e-26 120.9 139 48.9
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 9.7e-26 120.6 139 48.9
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 1.3e-25 120.2 139 49.6
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.7e-25 118.6 136 51.5
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 3.7e-25 118.6 139 48.9
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 4.8e-25 118.2 136 51.5
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 4.8e-25 118.2 136 50.7
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 4.8e-25 118.2 136 50.7
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 4.8e-25 118.2 139 48.9
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 6.3e-25 117.9 136 50.7
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 6.3e-25 117.9 135 50.4
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 8.2e-25 117.5 139 48.2
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.1e-24 117.1 139 46.8
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 1.4e-24 116.7 140 48.6
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 1.8e-24 116.3 137 50.4
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 2.4e-24 115.9 138 49.3
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 2.4e-24 115.9 139 46.8
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.4e-24 115.9 139 46.8
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 2.4e-24 115.9 136 50.7
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 2.4e-24 115.9 136 50.7
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 3.1e-24 115.5 136 49.3
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 3.1e-24 115.5 134 47.0
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 3.1e-24 115.5 136 50.0
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.1e-24 115.5 139 46.8
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 3.1e-24 115.5 139 46.8
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 3.1e-24 115.5 139 46.8
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 3.1e-24 115.5 138 47.1
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 5.3e-24 114.8 138 48.6
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 5.3e-24 114.8 140 47.9
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 7.0e-24 114.4 139 45.3
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 9.1e-24 114.0 136 50.7
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 1.2e-23 113.6 136 52.2
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 1.6e-23 113.2 136 50.0
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.6e-23 113.2 138 47.1
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.6e-23 113.2 136 47.8
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 2.0e-23 112.8 139 48.9
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 2.0e-23 112.8 135 48.9
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 2.0e-23 112.8 136 49.3
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 2.6e-23 112.5 136 52.2
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 2.6e-23 112.5 136 51.5
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 2.6e-23 112.5 136 49.3
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 2.6e-23 112.5 136 50.7
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 3.5e-23 112.1 138 46.4
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 3.5e-23 112.1 136 50.7
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 3.5e-23 112.1 136 49.3
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 3.5e-23 112.1 136 49.3
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 3.5e-23 112.1 136 48.5
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 4.5e-23 111.7 136 47.8
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 4.5e-23 111.7 139 46.8
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 4.5e-23 111.7 139 46.8
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 5.9e-23 111.3 138 47.1
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 5.9e-23 111.3 136 48.5
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 5.9e-23 111.3 139 48.2
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 5.9e-23 111.3 136 49.3
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 7.7e-23 110.9 136 47.8
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 7.7e-23 110.9 138 46.4
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 7.7e-23 110.9 135 47.4
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 7.7e-23 110.9 139 46.8
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 1.0e-22 110.5 139 47.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-22 110.5 138 44.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.0e-22 110.5 138 44.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.0e-22 110.5 138 44.9
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 1.0e-22 110.5 138 44.9
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 1.0e-22 110.5 139 45.3
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 1.0e-22 110.5 139 46.8
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.0e-22 110.5 136 47.8
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 1.7e-22 109.8 138 45.7
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 1.7e-22 109.8 138 47.8
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 2.2e-22 109.4 135 46.7
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 2.9e-22 109.0 136 45.6
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 2.9e-22 109.0 140 44.3
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.9e-22 109.0 139 45.3
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 3.8e-22 108.6 136 49.3
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.8e-22 108.6 147 44.2
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 3.8e-22 108.6 138 45.7
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 5.0e-22 108.2 139 43.2
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 5.0e-22 108.2 136 49.3
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 5.0e-22 108.2 139 45.3
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 6.5e-22 107.8 138 45.7
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 6.5e-22 107.8 136 48.5
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 8.5e-22 107.5 139 45.3
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 8.5e-22 107.5 139 45.3
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 1.1e-21 107.1 138 43.5
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.5e-21 106.7 137 44.5
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 1.5e-21 106.7 135 48.1
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.9e-21 106.3 138 43.5
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 2.5e-21 105.9 135 48.1
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 3.2e-21 105.5 133 45.1
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 3.2e-21 105.5 139 42.4
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 4.2e-21 105.1 138 44.9
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 5.5e-21 104.8 136 46.3
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 7.2e-21 104.4 139 45.3
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 9.4e-21 104.0 136 47.1
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 9.4e-21 104.0 145 44.1
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.2e-20 103.6 137 43.1
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 1.2e-20 103.6 140 40.7
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 1.6e-20 103.2 136 44.1
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 1.6e-20 103.2 139 43.9
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 1.6e-20 103.2 129 48.8
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 2.1e-20 102.8 139 45.3
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.7e-20 102.4 136 44.1
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.6e-20 102.1 136 42.6
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 4.7e-20 101.7 136 45.6
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 4.7e-20 101.7 136 45.6
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 4.7e-20 101.7 136 45.6
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 1.0e-19 100.5 143 41.3
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 1.4e-19 100.1 156 41.0
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 1.4e-19 100.1 140 41.4
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 1.8e-19 99.8 132 42.4
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 2.3e-19 99.4 159 40.9
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 2.3e-19 99.4 139 41.7
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 2.3e-19 99.4 139 45.3
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 2.3e-19 99.4 150 44.0
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 3.0e-19 99.0 129 44.2
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.0e-19 98.6 142 40.8
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.0e-19 98.6 142 40.8
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 6.8e-19 97.8 136 42.6
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 6.8e-19 97.8 139 40.3
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 8.8e-19 97.4 151 45.0
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.5e-18 96.7 136 41.9
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 2.0e-18 96.3 137 41.6
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 2.0e-18 96.3 137 43.1
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 4.4e-18 95.1 135 40.7
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 7.5e-18 94.4 135 40.0
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 1.3e-17 93.6 141 39.0
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.7e-17 93.2 135 40.0
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 2.2e-17 92.8 127 40.9
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 6.3e-17 91.3 136 42.6
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 6.3e-17 91.3 133 40.6
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 6.3e-17 91.3 138 41.3
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 4.1e-16 88.6 120 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 5.3e-16 88.2 140 36.4
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 5.3e-16 88.2 136 42.6
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 9.1e-16 87.4 133 44.4
CSS0039000 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 1.6e-15 86.7 79 57.0
QL10p058686 Quercus lobata HOM05D003188 ORTHO05D003602 1.6e-15 86.7 89 51.7
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 2.0e-15 86.3 136 38.2
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 2.0e-15 86.3 139 37.4
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 4.5e-15 85.1 89 51.7
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.9e-14 82.4 89 51.7
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 5.5e-13 78.2 142 36.6
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 8.0e-12 74.3 99 44.4
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 1.0e-11 73.9 83 47.0
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 1.4e-11 73.6 79 50.6
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.8e-11 73.2 79 46.8
FAN04G1160 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.3e-11 72.8 79 46.8
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 4.0e-11 72.0 86 45.3
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 8.8e-11 70.9 139 34.5
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 8.8e-11 70.9 139 34.5
Os12g0140266 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 2.0e-10 69.7 130 35.4
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 9.8e-10 67.4 132 31.8
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.3e-09 67.0 100 39.0
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 1.3e-09 67.0 135 31.1
FAN08G0088 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.8e-09 65.9 69 50.7
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 4.8e-09 65.1 132 31.8
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.8e-08 63.2 131 33.6
Rhsim09G0110400 Rhododendron simsii HOM05D003188 ORTHO05D003602 1.8e-08 63.2 59 54.2
SHI18941 Sapria himalayana HOM05D003188 ORTHO05D003602 3.1e-08 62.4 87 42.5
Cre11.g481550 Chlamydomonas reinhardtii HOM05D003188 ORTHO05D003602 3.5e-07 58.9 87 34.5
EL10Ac4g09232 Beta vulgaris HOM05D003188 ORTHO05D003602 1.0e-06 57.4 134 32.1
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 1.0e-06 57.4 54 50.0
FAN13G2738 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.0e-06 57.4 75 41.3
Cpa.g.sc79.50 Carica papaya HOM05D003188 ORTHO05D003602 2.9e-06 55.8 64 46.9
FvH4_6g19571 Fragaria vesca HOM05D003188 ORTHO05D003602 3.8e-06 55.5 54 48.1


User provided reference genes

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