Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.3e-251 871.3 460 100.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 9.1e-185 650.6 460 75.4
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 3.4e-184 648.7 449 75.7
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 5.9e-184 647.9 460 75.4
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.3e-183 646.7 460 75.9
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.9e-182 642.9 461 75.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.5e-182 642.5 461 74.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 9.4e-182 640.6 461 74.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.6e-181 638.6 460 72.4
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 7.9e-181 637.5 448 75.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.0e-179 632.9 460 73.0
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 4.4e-179 631.7 448 73.4
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 9.7e-179 630.6 460 73.0
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 9.7e-179 630.6 460 73.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.7e-178 629.8 462 71.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.2e-178 629.4 463 73.0
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.8e-178 628.2 460 72.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.6e-176 623.2 460 72.8
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.6e-176 622.5 460 70.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 7.7e-176 620.9 459 70.6
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 7.7e-176 620.9 441 73.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.7e-175 619.8 466 71.2
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 5.0e-175 618.2 460 72.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 6.5e-175 617.8 460 72.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.5e-174 615.9 463 71.1
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 3.2e-174 615.5 460 70.4
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.2e-174 615.5 447 74.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 5.5e-174 614.8 461 72.0
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 9.4e-174 614.0 460 70.9
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.6e-173 613.2 461 71.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.1e-173 611.3 462 71.0
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 6.7e-172 607.8 462 69.3
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.0e-171 606.3 461 72.0
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 7.5e-171 604.4 463 70.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.8e-170 602.4 460 69.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 6.3e-170 601.3 465 72.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 7.0e-169 597.8 459 69.7
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 2.7e-168 595.9 463 70.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 2.7e-168 595.9 458 69.0
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.5e-168 595.5 463 70.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.0e-167 594.0 460 69.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.3e-167 593.6 461 70.3
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.7e-167 593.2 462 68.6
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.7e-167 593.2 462 68.2
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 5.0e-167 591.7 455 69.9
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.5e-166 590.1 460 67.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.5e-166 590.1 463 69.8
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.9e-166 589.7 436 72.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.5e-166 589.3 451 71.2
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.5e-166 589.3 460 68.0
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 4.2e-166 588.6 464 68.3
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 5.5e-166 588.2 464 69.4
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 5.5e-166 588.2 464 69.8
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 9.4e-166 587.4 463 68.9
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.4e-166 587.4 454 68.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.7e-165 585.1 465 70.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.4e-164 583.6 460 71.1
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.3e-164 582.8 454 69.6
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.0e-164 582.4 454 68.1
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 5.2e-164 581.6 447 70.5
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.2e-163 580.5 460 68.7
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.6e-163 579.3 464 70.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.2e-162 576.2 464 68.5
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.2e-162 576.2 464 68.5
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.7e-162 575.5 460 67.2
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.8e-162 575.1 454 67.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 6.3e-162 574.7 461 67.5
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 8.3e-162 574.3 461 67.7
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.4e-161 571.6 465 67.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 7.0e-161 571.2 461 68.8
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.9e-159 565.8 462 66.9
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.1e-157 559.7 362 79.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.7e-157 558.5 453 68.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.7e-157 558.5 459 67.8
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.0e-157 557.8 461 66.2
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.2e-156 555.1 461 65.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.8e-156 554.3 450 66.4
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.0e-155 553.1 460 65.4
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-154 550.1 460 64.8
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.7e-154 550.1 341 82.1
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.9e-154 548.5 460 65.0
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.3e-154 547.7 450 66.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-153 547.4 460 65.4
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.4e-153 546.2 460 64.8
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-152 543.9 461 65.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-152 543.9 461 65.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-152 543.9 461 65.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 5.9e-152 541.6 460 64.3
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 5.0e-151 538.5 462 64.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 8.6e-151 537.7 404 70.0
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.9e-150 536.6 461 64.6
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 9.5e-150 534.3 423 69.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.0e-148 530.8 451 66.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.0e-148 530.8 451 66.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.4e-148 530.4 450 65.8
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-148 530.0 463 62.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 8.9e-148 527.7 450 65.6
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 4.1e-145 518.8 354 75.7
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.6e-144 516.9 362 73.5
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.2e-138 496.5 317 80.8
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.2e-136 490.7 460 60.0
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.3e-135 487.3 461 58.6
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-134 483.8 449 60.8
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.9e-130 469.5 311 77.2
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.7e-127 460.3 290 82.8
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.5e-126 456.4 307 77.2
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.1e-121 439.1 282 80.9
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.8e-116 423.7 428 56.3
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.1e-116 422.9 392 59.2
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.2e-114 416.8 377 58.6
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.9e-114 416.4 373 60.3
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 7.1e-113 411.8 399 56.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 7.8e-112 408.3 299 70.9
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.7e-111 404.8 374 57.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-110 404.4 280 75.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.3e-102 376.3 384 55.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.4e-100 370.9 284 70.1
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.5e-99 367.5 319 62.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.2e-97 359.8 369 54.7
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.9e-95 352.8 337 58.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.3e-92 342.4 366 52.7
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 4.9e-90 335.9 384 50.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.6e-88 330.9 369 50.1
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 8.2e-85 318.5 373 50.9
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 3.2e-81 306.6 375 46.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 3.3e-78 296.6 243 66.7
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.6e-67 260.4 332 49.4
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 2.8e-53 213.8 150 72.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 8.0e-48 195.7 345 40.0
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-41 175.3 163 55.8
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-40 169.9 229 46.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-36 158.7 128 64.1
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.0e-31 142.1 199 45.7
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.9e-31 139.0 92 72.8
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.6e-30 137.5 122 59.8
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-27 127.9 171 45.6
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.2e-24 118.6 73 84.9
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.4e-21 106.3 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-16 91.3 149 40.9
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.3e-13 82.0 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.6e-08 63.9 69 53.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.2e-06 58.9 149 36.2


User provided reference genes

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