Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 8.0e-51 203.4 96 100.0
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 1.1e-20 103.2 51 98.0
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 1.5e-17 92.8 59 72.9
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 7.6e-17 90.5 51 86.3
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 1.7e-16 89.4 59 71.2
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 2.2e-16 89.0 59 69.5
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 2.9e-16 88.6 59 72.9
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 3.7e-16 88.2 59 71.2
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 3.7e-16 88.2 51 80.4
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 4.9e-16 87.8 59 67.8
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 4.9e-16 87.8 59 69.5
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 6.4e-16 87.4 59 67.8
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 8.3e-16 87.0 59 67.8
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 8.3e-16 87.0 59 67.8
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 8.3e-16 87.0 59 67.8
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 8.3e-16 87.0 59 67.8
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 8.3e-16 87.0 51 84.3
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 8.3e-16 87.0 51 84.3
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 8.3e-16 87.0 59 67.8
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.1e-15 86.7 59 67.8
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 1.1e-15 86.7 51 82.4
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 1.4e-15 86.3 51 82.4
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 1.9e-15 85.9 59 69.5
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 1.9e-15 85.9 59 66.1
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.4e-15 85.5 59 67.8
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 2.4e-15 85.5 59 67.8
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 2.4e-15 85.5 59 67.8
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 2.4e-15 85.5 51 82.4
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.2e-15 85.1 59 66.1
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 4.1e-15 84.7 59 66.1
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 7.1e-15 84.0 52 75.0
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 7.1e-15 84.0 59 66.1
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 9.2e-15 83.6 59 66.1
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 1.2e-14 83.2 59 64.4
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 1.2e-14 83.2 59 64.4
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 1.2e-14 83.2 51 80.4
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 1.2e-14 83.2 59 66.1
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 1.6e-14 82.8 59 66.1
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 3.5e-14 81.6 59 61.0
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 4.6e-14 81.3 43 83.7
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 4.6e-14 81.3 44 86.4
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 6.0e-14 80.9 59 62.7
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 1.0e-13 80.1 61 63.9
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 1.0e-13 80.1 51 78.4
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 1.3e-13 79.7 55 69.1
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 1.3e-13 79.7 51 72.5
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 1.3e-13 79.7 59 61.0
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 1.7e-13 79.3 51 72.5
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 1.7e-13 79.3 59 62.7
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 1.7e-13 79.3 59 62.7
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 2.3e-13 79.0 61 62.3
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 3.0e-13 78.6 51 72.5
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 5.1e-13 77.8 43 81.4
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 6.6e-13 77.4 59 64.4
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 8.6e-13 77.0 47 72.3
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 8.6e-13 77.0 47 72.3
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 8.6e-13 77.0 51 74.5
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.1e-12 76.6 48 75.0
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 1.5e-12 76.3 51 72.5
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 3.3e-12 75.1 51 68.6
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 3.3e-12 75.1 43 76.7
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 4.3e-12 74.7 59 59.3
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 5.6e-12 74.3 59 57.6
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 5.6e-12 74.3 59 62.7
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 7.3e-12 73.9 43 79.1
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 7.3e-12 73.9 59 57.6
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 9.6e-12 73.6 43 79.1
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.2e-11 73.2 59 59.3
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 1.2e-11 73.2 59 61.0
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 1.2e-11 73.2 51 64.7
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 1.6e-11 72.8 59 55.9
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.1e-11 72.4 43 79.1
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 2.1e-11 72.4 51 68.6
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 3.6e-11 71.6 43 72.1
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 3.6e-11 71.6 43 69.8
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 6.2e-11 70.9 43 74.4
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 6.2e-11 70.9 59 57.6
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 6.2e-11 70.9 59 55.9
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 8.1e-11 70.5 59 55.9
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 8.1e-11 70.5 59 55.9
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 8.1e-11 70.5 59 55.9
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 8.1e-11 70.5 59 55.9
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 1.1e-10 70.1 59 54.2
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 1.4e-10 69.7 59 54.2
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 1.4e-10 69.7 59 54.2
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 1.4e-10 69.7 43 72.1
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.8e-10 69.3 59 54.2
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 1.8e-10 69.3 59 54.2
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 1.8e-10 69.3 43 72.1
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 2.4e-10 68.9 43 72.1
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 2.4e-10 68.9 43 74.4
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 3.1e-10 68.6 47 70.2
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 3.1e-10 68.6 59 54.2
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 3.1e-10 68.6 59 54.2
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 3.1e-10 68.6 43 76.7
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 2.6e-09 65.5 44 65.9
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 4.4e-09 64.7 43 60.5
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 7.6e-09 63.9 56 50.0
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.7e-08 62.8 36 69.4
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 4.9e-08 61.2 59 47.5
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 1.4e-07 59.7 40 57.5
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 3.2e-07 58.5 51 47.1
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 4.2e-07 58.2 43 60.5
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 4.2e-07 58.2 39 66.7


User provided reference genes

Program Settings