Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 0.0e+00 1117.8 562 100.0
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 1.5e-269 932.6 562 81.7
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 9.5e-269 929.9 565 80.9
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.8e-267 925.6 562 81.3
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.5e-266 922.5 561 80.9
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 2.4e-264 915.2 563 81.0
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 4.1e-264 914.4 562 80.4
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 4.1e-264 914.4 565 80.0
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 3.9e-262 907.9 564 80.1
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 1.9e-261 905.6 562 79.9
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 3.1e-259 898.3 562 79.7
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 4.0e-259 897.9 562 79.7
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 9.8e-258 893.3 562 80.8
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 1.9e-256 889.0 564 78.9
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 3.2e-256 888.3 564 80.5
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 2.0e-255 885.6 564 79.1
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 4.6e-255 884.4 562 79.5
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.0e-254 883.2 564 77.3
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.9e-253 879.0 564 77.8
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 5.6e-253 877.5 564 78.0
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 4.7e-252 874.4 563 77.1
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.8e-251 872.5 562 80.1
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 4.0e-251 871.3 562 77.6
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 1.7e-249 865.9 560 75.2
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 6.4e-249 864.0 562 78.3
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 1.1e-248 863.2 562 77.2
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 4.1e-248 861.3 556 74.3
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 2.7e-247 858.6 564 75.2
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 1.0e-246 856.7 572 76.7
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 1.0e-246 856.7 562 77.0
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 8.6e-246 853.6 569 75.2
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 1.5e-245 852.8 562 75.6
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 2.5e-245 852.0 566 75.3
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 5.6e-245 850.9 563 75.1
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 4.7e-244 847.8 562 76.0
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 8.1e-244 847.0 564 72.2
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 1.8e-243 845.9 563 73.7
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 2.3e-243 845.5 559 74.4
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 6.8e-243 844.0 562 74.9
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 6.8e-243 844.0 562 76.2
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 8.9e-243 843.6 563 76.6
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 2.6e-242 842.0 566 74.7
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 5.8e-242 840.9 588 74.1
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.9e-242 840.1 563 74.4
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 9.9e-242 840.1 563 73.4
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.9e-240 835.9 563 73.5
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 2.4e-240 835.5 562 72.4
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.2e-239 833.2 563 73.0
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 1.2e-239 833.2 562 75.6
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 1.6e-239 832.8 565 74.2
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 2.7e-239 832.0 562 75.4
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 6.0e-239 830.9 564 74.3
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 6.0e-239 830.9 562 74.0
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 5.1e-238 827.8 564 75.7
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 4.3e-237 824.7 562 72.2
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 9.6e-237 823.5 559 73.2
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 2.4e-235 818.9 573 74.5
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 4.0e-235 818.1 564 72.5
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 5.2e-235 817.8 562 73.8
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 2.0e-234 815.8 564 70.9
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 6.4e-233 810.8 566 71.7
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 8.4e-233 810.4 558 73.3
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 1.1e-232 810.1 554 73.6
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 2.4e-232 808.9 562 72.1
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 1.7e-230 802.7 554 73.8
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 1.7e-230 802.7 554 74.5
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 3.9e-230 801.6 557 69.1
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 6.6e-230 800.8 565 71.5
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 3.3e-229 798.5 556 73.2
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.6e-228 796.2 562 72.1
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 2.8e-228 795.4 576 69.1
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 1.4e-227 793.1 555 72.3
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 2.4e-227 792.3 554 71.5
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 3.1e-227 792.0 555 72.6
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 3.1e-227 792.0 557 68.8
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 5.3e-227 791.2 568 71.1
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 6.9e-227 790.8 555 72.4
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 9.0e-227 790.4 554 72.2
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 2.0e-226 789.3 555 72.3
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 2.0e-226 789.3 557 68.8
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 3.4e-226 788.5 568 70.8
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 4.4e-226 788.1 554 72.0
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 7.6e-226 787.3 554 72.2
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 2.9e-225 785.4 565 71.5
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 9.3e-216 753.8 562 69.6
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 4.6e-215 751.5 554 70.0
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 1.5e-210 736.5 566 67.1
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 7.6e-210 734.2 473 78.4
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 6.5e-209 731.1 662 59.1
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 3.4e-202 708.8 685 57.8
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 2.2e-201 706.1 564 63.8
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 3.7e-196 688.7 479 71.2
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.5e-194 683.3 496 65.3
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 2.0e-186 656.4 564 61.9
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 4.5e-178 628.6 505 61.2
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 4.2e-176 622.1 682 52.2
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 1.8e-158 563.5 381 72.2
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 3.5e-146 522.7 315 77.1
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 9.6e-120 434.9 347 61.1
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 9.3e-115 418.3 477 48.8
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.3e-113 414.5 357 61.9
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 4.8e-103 379.4 508 43.1
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 2.3e-81 307.4 481 37.6
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 8.5e-76 288.9 235 63.8
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 2.9e-68 263.8 182 68.1
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.0e-65 255.4 156 78.2
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 1.8e-57 228.0 485 31.8
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.4e-54 217.6 209 56.5
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.4e-54 217.6 209 56.5
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.2e-52 211.1 206 53.9
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 8.5e-52 209.1 156 62.2
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.5e-43 181.0 149 65.1
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 3.6e-42 177.2 181 50.8
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.4e-41 175.3 149 59.7
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 4.3e-27 127.1 129 51.9
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 8.3e-23 112.8 111 48.6
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 5.2e-09 67.0 124 36.3
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 6.4e-07 60.1 79 36.7
Actinidia08858 Actinidia chinensis HOM05D006589 ORTHO05D008350 2.4e-06 58.2 80 68.8
RcHm_v2.0_Chr1g0380361 Rosa chinensis HOM05D006589 ORTHO05D008350 3.2e-06 57.8 81 56.8


User provided reference genes

Program Settings