Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 4.8e-132 474.6 249 100.0
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 4.1e-99 365.2 222 82.4
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 5.4e-99 364.8 222 80.6
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 5.4e-99 364.8 222 81.1
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 7.0e-99 364.4 236 76.7
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 4.6e-98 361.7 222 79.7
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 5.9e-98 361.3 222 79.7
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 7.8e-98 360.9 221 81.9
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.3e-97 359.4 221 76.0
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 3.9e-97 358.6 222 75.7
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 6.6e-97 357.8 222 77.5
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.1e-96 357.1 222 74.8
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 1.9e-96 356.3 222 80.2
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 3.3e-96 355.5 221 76.5
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 5.6e-96 354.8 222 74.8
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 7.3e-96 354.4 222 74.8
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 7.3e-96 354.4 239 74.1
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.2e-95 353.6 222 80.6
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.6e-95 353.2 220 77.3
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 3.6e-95 352.1 220 77.3
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 6.2e-95 351.3 222 73.9
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 1.4e-94 350.1 222 73.4
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 1.4e-94 350.1 222 78.4
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 1.8e-94 349.7 222 73.0
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 1.8e-94 349.7 222 74.3
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.8e-94 349.7 222 74.8
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.8e-94 349.7 222 80.2
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 2.3e-94 349.4 221 80.5
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 3.1e-94 349.0 222 75.7
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 3.1e-94 349.0 222 78.4
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 4.0e-94 348.6 222 73.0
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 8.9e-94 347.4 222 75.2
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.9e-94 347.4 222 73.9
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.2e-93 347.1 218 75.2
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 2.0e-93 346.3 222 79.3
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 3.4e-93 345.5 220 80.5
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.4e-93 345.5 222 73.9
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 4.4e-93 345.1 222 77.5
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.8e-93 344.7 243 68.7
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 9.8e-93 344.0 222 73.4
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 1.3e-92 343.6 222 74.3
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 1.7e-92 343.2 220 74.5
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 2.2e-92 342.8 222 72.1
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 2.9e-92 342.4 222 71.6
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 3.7e-92 342.0 235 70.6
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 3.7e-92 342.0 222 71.6
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 4.9e-92 341.7 220 78.2
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 6.4e-92 341.3 222 77.0
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 1.1e-91 340.5 219 73.1
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 1.1e-91 340.5 221 80.1
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.1e-91 340.5 222 77.5
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 1.1e-91 340.5 247 72.1
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.4e-91 340.1 221 79.6
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 4.1e-91 338.6 222 75.7
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 7.0e-91 337.8 220 72.7
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.2e-90 337.0 214 73.8
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 3.5e-90 335.5 222 72.1
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 7.8e-90 334.3 222 71.6
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 1.0e-89 334.0 223 72.2
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.3e-89 333.6 222 72.1
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.3e-89 333.6 222 76.1
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 1.7e-89 333.2 222 71.6
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.7e-89 333.2 222 70.7
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 2.3e-89 332.8 220 77.3
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 3.9e-89 332.0 221 75.6
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 3.9e-89 332.0 220 72.3
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 5.0e-89 331.6 221 76.5
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.5e-88 330.1 222 76.1
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 2.5e-88 329.3 219 70.8
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 3.3e-88 328.9 222 75.7
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 4.3e-88 328.6 222 69.8
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 5.6e-88 328.2 220 71.4
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 7.3e-88 327.8 222 69.4
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 9.5e-88 327.4 219 71.7
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 9.5e-88 327.4 219 71.7
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 1.2e-87 327.0 222 68.5
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.2e-87 327.0 222 69.4
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 1.6e-87 326.6 221 76.0
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.6e-87 326.6 220 69.5
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 2.1e-87 326.2 209 79.4
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 2.8e-87 325.9 222 70.3
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.8e-87 325.9 227 74.0
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.6e-87 325.5 222 69.4
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 6.2e-87 324.7 227 73.6
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 6.2e-87 324.7 222 70.3
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 1.8e-86 323.2 222 70.3
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.8e-86 323.2 222 68.0
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.8e-86 323.2 225 73.8
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 1.8e-86 323.2 222 67.6
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 3.1e-86 322.4 222 70.3
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 3.1e-86 322.4 222 70.3
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 5.2e-86 321.6 222 69.4
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.2e-85 320.5 222 71.6
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.5e-85 320.1 222 74.3
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 2.0e-85 319.7 223 68.6
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 5.8e-85 318.2 220 68.6
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 5.8e-85 318.2 214 76.6
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 9.9e-85 317.4 211 75.8
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 1.3e-84 317.0 222 73.4
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 1.3e-84 317.0 222 67.6
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.3e-84 317.0 222 68.0
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.3e-84 317.0 207 72.9
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 2.2e-84 316.2 218 68.3
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 3.7e-84 315.5 220 70.0
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 2.4e-83 312.8 222 64.9
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 7.1e-83 311.2 220 67.7
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 9.2e-83 310.8 220 70.0
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 1.2e-82 310.5 205 72.7
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.2e-82 310.5 222 67.6
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 2.1e-82 309.7 226 65.5
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 2.3e-81 306.2 222 66.7
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 3.9e-81 305.4 222 67.1
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 6.6e-81 304.7 220 71.8
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 3.3e-80 302.4 222 62.6
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 4.3e-80 302.0 220 66.8
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 9.5e-80 300.8 217 73.3
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 9.5e-80 300.8 222 64.4
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 1.2e-79 300.4 218 63.3
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 1.6e-79 300.1 222 64.0
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 5.2e-78 295.0 224 68.8
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 2.6e-77 292.7 207 67.1
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 5.8e-77 291.6 224 63.4
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 7.6e-77 291.2 224 68.8
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.2e-76 289.7 225 63.6
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 2.2e-76 289.7 224 63.4
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 4.9e-76 288.5 222 63.1
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 8.4e-76 287.7 224 62.9
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.6e-74 283.5 244 61.1
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 4.6e-74 282.0 256 57.4
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 1.0e-73 280.8 224 62.5
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 1.0e-73 280.8 224 62.5
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 2.3e-73 279.6 224 62.1
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 3.9e-73 278.9 224 62.1
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 3.9e-73 278.9 224 62.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 3.3e-72 275.8 216 63.0
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 1.6e-71 273.5 216 61.6
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 2.4e-70 269.6 222 62.6
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 1.1e-67 260.8 175 73.1
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 3.8e-60 235.7 216 50.0
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 9.0e-54 214.5 219 49.8
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 1.2e-50 204.1 218 47.2
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 6.7e-49 198.4 136 69.9
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.5e-48 196.4 136 69.1
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 9.6e-48 194.5 206 49.5
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 6.9e-46 188.3 161 59.0
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 3.2e-43 179.5 220 47.7
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 9.7e-32 141.4 104 71.2
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 7.7e-29 131.7 211 39.8
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 3.8e-28 129.4 166 45.8
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 5.0e-28 129.0 81 75.3
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 3.7e-23 112.8 222 33.8
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 8.5e-20 101.7 222 34.7
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 2.0e-08 63.9 49 61.2
Duzib168G0754 Durio zibethinus HOM05D000836 ORTHO05D000709 2.8e-07 60.1 91 35.2
AUR62032365 Chenopodium quinoa HOM05D000836 ORTHO05D000709 1.4e-06 57.8 117 31.6
AUR62024855 Chenopodium quinoa HOM05D000836 ORTHO05D000709 2.4e-06 57.0 103 33.0
EL10Ac2g02555 Beta vulgaris HOM05D000836 ORTHO05D000709 4.1e-06 56.2 91 33.0
Zm00001eb161690 Zea mays HOM05D000836 ORTHO05D000709 4.1e-06 56.2 91 33.0
COL.COLO4_24036 Corchorus olitorius HOM05D000836 ORTHO05D000709 5.3e-06 55.8 91 33.0
Haze_25664 Corylus avellana HOM05D000836 ORTHO05D000709 5.3e-06 55.8 153 26.8
THA.LOC104809014 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 5.3e-06 55.8 91 33.0
Carub.0007s0800 Capsella rubella HOM05D000836 ORTHO05D000709 7.0e-06 55.5 91 31.9
Gohir.A06G047100 Gossypium hirsutum HOM05D000836 ORTHO05D000709 9.1e-06 55.1 115 30.4
Gohir.D06G047400 Gossypium hirsutum HOM05D000836 ORTHO05D000709 9.1e-06 55.1 91 34.1
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 9.1e-06 55.1 91 33.0
Gorai.010G053000 Gossypium raimondii HOM05D000836 ORTHO05D000709 9.1e-06 55.1 91 34.1
Gorai.013G240700 Gossypium raimondii HOM05D000836 ORTHO05D000709 9.1e-06 55.1 91 33.0


User provided reference genes

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