Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 0.0e+00 1649.0 987 100.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 0.0e+00 1096.6 1000 70.2
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 4.3e-301 1038.1 999 65.9
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 5.5e-296 1021.1 995 64.5
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.0e-294 1016.9 1046 62.4
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 1.0e-294 1016.9 1047 63.3
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.9e-294 1015.0 1008 65.5
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.1e-291 1006.9 1020 65.6
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 3.8e-289 998.4 1046 61.1
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.1e-283 980.3 1015 63.3
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 1.8e-283 979.5 1001 65.4
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 4.5e-282 974.9 996 64.4
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 5.5e-280 968.0 1016 64.4
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 5.5e-280 968.0 1007 64.6
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.2e-279 966.8 1000 63.4
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 5.7e-277 958.0 1003 61.9
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 9.7e-277 957.2 1001 64.4
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.3e-276 956.8 999 63.7
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 2.0e-274 949.5 998 63.0
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 4.5e-274 948.3 1047 58.9
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.0e-273 947.2 995 62.0
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 3.8e-273 945.3 1008 63.9
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.0e-273 944.9 1004 64.4
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 5.5e-272 941.4 999 64.2
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 7.2e-272 941.0 1003 63.9
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 7.2e-272 941.0 1021 61.2
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.2e-271 940.3 994 63.9
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 3.6e-271 938.7 1039 60.3
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 8.8e-270 934.1 997 63.7
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.2e-269 933.7 1002 62.3
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 2.6e-269 932.6 1001 61.6
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.7e-268 928.7 1003 64.1
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 1.8e-267 926.4 1060 59.8
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 5.3e-267 924.9 1039 60.5
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 7.0e-267 924.5 736 75.7
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.2e-266 923.7 997 63.0
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.7e-266 922.5 1052 58.6
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 2.7e-266 922.5 995 63.3
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 4.5e-266 921.8 995 63.0
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 5.9e-266 921.4 1049 58.4
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.3e-265 920.2 991 60.9
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 2.2e-265 919.5 1007 62.0
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 3.8e-265 918.7 1005 60.1
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 5.0e-265 918.3 996 61.2
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 6.5e-265 917.9 1013 61.9
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.5e-264 916.8 986 63.6
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 1.5e-264 916.8 1009 59.7
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 3.2e-264 915.6 1023 60.8
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.6e-263 913.3 991 60.4
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 4.7e-263 911.8 999 62.7
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 4.7e-263 911.8 1026 59.6
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 6.1e-263 911.4 1002 62.9
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.4e-262 910.2 1055 58.3
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 1.8e-262 909.8 1006 61.5
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 8.8e-262 907.5 1012 61.4
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 1.2e-261 907.1 1003 61.3
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.5e-261 906.7 1010 58.8
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 2.6e-261 906.0 1003 59.7
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 2.6e-261 906.0 1008 59.3
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 2.6e-261 906.0 1051 57.9
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.4e-261 905.6 1048 58.3
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 9.8e-261 904.0 1009 59.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 2.8e-260 902.5 1005 61.2
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.8e-259 899.8 1039 58.3
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 5.4e-259 898.3 1002 61.1
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.7e-257 893.3 994 58.4
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 6.6e-257 891.3 1035 58.5
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 1.1e-256 890.6 1182 55.3
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.5e-256 890.2 1044 59.7
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.5e-256 889.4 1045 57.3
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 7.2e-256 887.9 988 58.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.8e-255 885.9 1072 56.3
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.8e-254 883.2 1020 58.9
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 4.0e-254 882.1 991 59.0
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 5.2e-254 881.7 1040 58.6
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 4.4e-253 878.6 1003 61.3
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.2e-252 876.3 989 59.0
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 4.9e-252 875.2 1078 57.7
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.6e-250 870.2 986 59.9
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 2.0e-250 869.8 1006 59.2
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 4.5e-250 868.6 1004 60.6
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 7.8e-250 867.8 995 58.5
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 1.6e-247 860.1 1036 58.6
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 4.0e-246 855.5 1015 57.5
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.0e-246 855.5 1028 56.8
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 5.2e-246 855.1 1008 56.8
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 5.2e-246 855.1 1015 57.3
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 6.8e-246 854.7 986 60.4
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 9.8e-245 850.9 997 58.4
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 5.4e-243 845.1 987 58.1
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.2e-242 844.0 984 57.6
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 3.5e-242 842.4 989 57.7
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.0e-241 840.9 982 56.7
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 3.9e-241 839.0 1148 50.7
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 3.9e-241 839.0 987 56.7
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.1e-240 837.4 1031 56.5
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 2.5e-240 836.3 996 57.1
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 7.3e-240 834.7 1000 57.6
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.6e-239 832.4 1009 57.3
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.4e-238 830.5 1034 55.8
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 9.8e-237 824.3 1018 56.2
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 8.3e-236 821.2 988 58.2
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.4e-235 820.5 1164 49.6
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 5.4e-235 818.5 1024 56.5
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 4.6e-234 815.5 1021 55.8
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 5.8e-229 798.5 1020 56.7
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 7.5e-229 798.1 1062 51.7
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 4.9e-228 795.4 990 56.4
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 9.2e-227 791.2 1011 56.5
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.3e-225 787.3 984 55.7
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.9e-224 783.5 1028 56.5
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 5.6e-224 781.9 992 54.8
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 4.7e-223 778.9 1002 53.9
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.1e-222 777.7 987 55.2
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.4e-222 777.3 1028 52.9
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 6.6e-209 731.9 1065 49.4
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 1.4e-203 714.1 1070 49.7
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 7.9e-194 681.8 999 52.9
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 3.2e-179 633.3 1092 44.8
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.1e-176 624.8 481 75.9
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 2.2e-164 583.9 900 47.9
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.1e-162 577.4 1016 43.0
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.0e-156 558.5 998 43.6
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.9e-149 532.7 810 49.3
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.3e-148 531.6 549 62.1
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 8.5e-148 528.9 719 53.3
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 7.3e-131 472.6 739 46.7
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 3.7e-111 407.1 1048 34.7
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 3.9e-108 397.1 391 61.9
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 1.8e-81 308.5 528 46.0
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 4.1e-73 280.8 532 43.0
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 4.1e-65 254.2 346 52.6
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.9e-54 218.8 291 53.6
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 1.5e-51 209.1 158 76.6
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.3e-50 206.1 194 63.4
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 1.2e-48 199.5 137 83.2
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 3.6e-45 188.0 392 40.3
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 6.5e-39 167.2 322 40.4
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.2e-37 162.9 588 30.1
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 3.4e-35 154.8 363 36.9
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.5e-32 144.8 207 50.7
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 1.3e-31 142.9 399 34.6
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-31 142.5 232 47.0
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 2.1e-29 135.6 506 30.6
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 1.4e-28 132.9 90 84.4
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.4e-28 132.9 119 68.9
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 3.0e-28 131.7 121 59.5
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 4.0e-28 131.3 87 81.6
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.4e-25 122.9 360 33.3
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 5.9e-24 117.5 447 30.9
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 7.7e-24 117.1 212 43.4
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.3e-23 115.5 96 72.9
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-23 115.5 99 68.7
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 6.6e-23 114.0 88 70.5
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.5e-22 112.1 436 29.6
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 7.3e-22 110.5 546 30.0
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 6.1e-21 107.5 78 76.9
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 1.0e-20 106.7 63 90.5
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 5.2e-20 104.4 84 69.0
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.4e-19 101.7 647 26.0
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 9.8e-19 100.1 669 25.3
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 2.2e-18 99.0 168 46.4
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.1e-17 96.7 65 81.5
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.4e-17 96.3 73 74.0
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.8e-17 95.9 97 61.9
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 3.2e-17 95.1 74 71.6
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-15 89.4 57 87.7
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 5.0e-15 87.8 118 51.7
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 8.6e-15 87.0 75 69.3
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 3.6e-13 81.6 60 76.7
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 6.2e-13 80.9 59 72.9
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 6.2e-13 80.9 59 72.9
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 8.0e-13 80.5 163 41.1
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 2.0e-11 75.9 79 60.8
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 9.8e-11 73.6 75 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 7.8e-08 63.9 147 36.7
Dinv23957 Davidia involucrata HOM05D038150 ORTHO05D000476 3.0e-07 62.0 78 47.4
Dinv43032 Davidia involucrata HOM05D038150 ORTHO05D000476 3.0e-07 62.0 79 49.4
Dinv25317 Davidia involucrata HOM05D000055 ORTHO05D000057 3.9e-07 61.6 77 48.1
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 5.0e-07 61.2 71 57.7


User provided reference genes

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