Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 2.3e-288 995.0 538 100.0
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 1.6e-140 503.8 546 53.7
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.1e-136 489.2 539 54.7
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.7e-134 483.8 541 53.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-134 483.8 551 52.1
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.1e-133 481.1 543 52.9
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.5e-133 479.9 539 52.3
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.6e-132 477.2 536 52.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 8.0e-132 474.9 500 55.8
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.4e-131 474.2 541 51.0
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 1.5e-130 470.7 536 51.3
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.5e-130 470.7 536 51.7
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.2e-129 466.8 508 53.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.4e-128 464.2 530 51.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 4.1e-128 462.6 548 50.9
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.2e-126 456.8 542 49.3
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 3.2e-125 453.0 549 49.5
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 5.5e-125 452.2 521 52.4
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 7.2e-125 451.8 550 49.3
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 9.4e-125 451.4 545 50.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.6e-124 450.7 536 50.4
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 2.1e-124 450.3 548 49.5
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 3.6e-124 449.5 551 50.1
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 6.1e-124 448.7 482 51.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.3e-123 446.8 486 52.9
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.3e-123 446.8 480 53.3
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.2e-122 444.5 360 63.9
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.5e-122 444.1 417 57.3
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 3.4e-122 443.0 485 52.8
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.3e-121 441.0 542 50.0
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 2.8e-121 439.9 543 50.6
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.8e-121 439.9 493 52.9
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 3.7e-121 439.5 540 48.0
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.1e-120 438.0 487 52.6
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.8e-120 437.2 495 53.1
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 3.1e-120 436.4 537 50.1
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 5.4e-120 435.6 486 49.8
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.2e-119 434.5 504 53.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.6e-119 434.1 482 51.9
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 2.7e-119 433.3 361 60.9
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.5e-119 433.0 531 48.4
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 5.9e-119 432.2 522 48.9
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 5.9e-119 432.2 550 49.6
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 2.3e-118 430.3 355 65.6
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.5e-117 427.6 363 62.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.9e-117 427.2 449 52.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 4.2e-117 426.0 570 47.2
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 2.8e-116 423.3 490 52.4
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.8e-116 423.3 383 61.1
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 3.6e-116 422.9 544 48.3
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.8e-115 420.6 473 52.6
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 4.0e-115 419.5 506 49.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.2e-114 417.9 542 48.2
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 3.4e-114 416.4 338 64.8
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 1.7e-113 414.1 478 51.7
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-112 411.4 364 59.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.8e-112 410.6 488 48.8
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.6e-111 407.5 461 52.3
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 3.5e-111 406.4 479 50.7
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.3e-110 403.7 359 60.2
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 6.6e-110 402.1 358 59.2
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 8.6e-110 401.7 486 49.8
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 3.6e-108 396.4 454 52.0
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.7e-108 396.0 463 52.1
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.8e-107 394.0 507 46.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.3e-107 393.7 355 58.6
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 9.8e-106 388.3 344 60.8
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 8.3e-105 385.2 442 51.1
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.1e-104 384.8 516 46.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.4e-104 383.6 487 47.6
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.4e-104 382.5 357 56.9
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 9.2e-104 381.7 580 44.7
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 2.7e-103 380.2 469 49.9
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.7e-103 380.2 419 54.4
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.5e-103 379.8 401 51.9
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.3e-101 373.2 362 55.0
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.3e-101 373.2 357 55.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.2e-100 371.3 449 50.1
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 2.1e-100 370.5 443 50.1
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 8.9e-99 365.2 355 56.3
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 5.8e-98 362.5 326 59.2
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 5.8e-98 362.5 492 45.9
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 5.8e-98 362.5 485 45.4
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 9.8e-98 361.7 455 46.6
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.2e-96 356.7 364 54.9
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 7.1e-96 355.5 358 52.2
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-95 354.8 324 58.3
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-87 328.2 400 49.5
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 6.8e-83 312.4 303 60.1
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 2.3e-78 297.4 353 52.7
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.5e-77 293.9 327 52.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.3e-76 291.6 303 54.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.5e-74 284.6 187 73.3
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.4e-74 283.5 221 66.1
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 4.4e-74 283.1 361 45.2
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.3e-73 281.6 353 45.0
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.4e-72 278.1 314 49.7
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 9.3e-72 275.4 358 48.3
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 4.6e-71 273.1 339 48.7
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 3.0e-70 270.4 303 50.5
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.4e-67 261.5 415 45.5
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-66 258.5 353 47.9
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.7e-65 254.6 294 51.7
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.3e-62 244.2 236 56.8
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.9e-62 243.4 435 36.6
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 3.1e-59 233.8 285 46.3
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 7.6e-58 229.2 183 62.3
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 2.2e-57 227.6 185 63.2
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.4e-56 224.9 294 44.2
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 3.2e-56 223.8 288 44.8
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 4.2e-56 223.4 324 41.4
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.2e-55 221.9 324 41.0
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.0e-54 218.8 154 72.1
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.0e-54 217.2 316 46.5
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.3e-52 211.8 144 70.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.0e-49 202.2 167 61.1
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.4e-48 198.4 227 50.2
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.2e-48 196.8 305 41.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-47 195.3 305 41.0
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-47 195.3 296 41.2
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.2e-47 195.3 168 60.1
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 1.0e-46 192.2 167 60.5
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.9e-46 190.3 299 39.1
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-45 188.7 285 40.0
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 6.3e-44 183.0 190 54.7
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.1e-43 182.2 173 57.2
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.2e-42 178.7 121 73.6
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.7e-41 174.9 295 41.7
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 6.5e-41 172.9 175 51.4
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.4e-38 165.2 179 49.7
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 6.5e-33 146.4 215 41.9
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.1e-32 145.6 255 33.7
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.3e-30 137.9 218 40.8
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 3.9e-30 137.1 142 52.8
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.3e-29 134.0 115 61.7
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 6.3e-28 129.8 198 40.9
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 4.5e-26 123.6 373 27.1
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.5e-24 118.6 108 57.4
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-23 114.8 178 41.6
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 2.8e-20 104.4 293 34.5
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.2e-18 99.0 129 44.2
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 5.9e-18 96.7 175 37.1
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 7.7e-18 96.3 63 66.7
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.0e-17 95.9 181 32.6
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 5.0e-17 93.6 88 52.3
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.2e-16 90.5 67 61.2
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 2.1e-15 88.2 48 77.1
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.8e-14 85.1 141 39.0
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.8e-14 82.8 140 38.6
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-10 72.4 40 85.0
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 1.6e-10 72.0 199 31.2
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 2.2e-09 68.2 93 43.0
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.9e-08 65.1 55 65.5
SHI11060 Sapria himalayana HOM05D001353 ORTHO05D005187 1.8e-06 58.5 44 72.7


User provided reference genes

Program Settings