Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 0.0e+00 1537.3 761 100.0
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.4e-307 1058.5 753 69.2
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 5.0e-297 1024.2 755 67.8
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.1e-296 1023.1 753 68.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 8.0e-295 1016.9 754 67.4
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.8e-294 1015.8 759 66.7
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.2e-293 1013.1 753 65.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.2e-292 1008.8 755 65.8
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 3.7e-292 1008.1 755 65.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.4e-291 1006.1 758 66.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.1e-291 1005.0 760 65.4
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.1e-288 996.5 753 64.3
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 4.7e-287 991.1 756 64.3
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 8.0e-287 990.3 755 65.7
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.4e-286 989.6 789 62.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 8.8e-286 986.9 751 65.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 8.8e-286 986.9 756 65.9
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 2.6e-285 985.3 757 64.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.4e-285 984.9 740 67.3
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.4e-285 984.6 714 68.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.3e-284 983.0 750 64.9
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.3e-284 983.0 803 62.1
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 2.4e-283 978.8 757 63.5
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 5.4e-283 977.6 774 64.1
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.5e-282 974.9 749 63.7
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 3.5e-282 974.9 753 64.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 3.8e-281 971.5 787 62.5
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.1e-280 969.9 753 62.9
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.2e-280 967.2 756 64.4
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.1e-279 964.1 752 64.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.0e-279 963.8 752 64.4
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 8.9e-278 960.3 832 59.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.5e-277 959.5 753 63.6
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 2.0e-277 959.1 780 62.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.4e-277 958.0 787 62.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 8.3e-276 953.7 753 63.1
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 7.0e-275 950.7 758 63.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 7.0e-275 950.7 752 62.6
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 7.8e-274 947.2 753 63.2
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.7e-273 946.0 750 62.8
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 3.8e-273 944.9 761 62.2
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 8.6e-273 943.7 752 61.8
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.9e-272 942.6 759 62.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 7.3e-272 940.6 747 62.9
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.8e-270 936.0 747 62.5
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 8.9e-270 933.7 748 62.6
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.4e-267 925.6 754 60.1
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 9.2e-267 923.7 756 61.1
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 2.0e-266 922.5 758 61.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.7e-265 919.5 752 60.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.0e-265 918.7 753 61.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 5.0e-265 917.9 748 61.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 8.6e-265 917.1 752 60.4
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.4e-262 909.8 783 59.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.8e-262 909.4 750 62.4
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 4.4e-261 904.8 757 59.7
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 5.8e-261 904.4 748 61.1
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.3e-257 892.5 754 59.0
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 8.6e-257 890.6 748 60.4
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.3e-256 887.5 756 61.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.2e-253 880.2 757 59.7
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.4e-253 878.6 746 60.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 4.4e-253 878.2 752 59.0
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.7e-252 876.3 754 58.2
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.1e-251 871.7 698 62.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 6.0e-250 867.8 751 57.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.7e-249 866.3 753 58.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 3.9e-249 865.1 764 57.5
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 6.6e-249 864.4 775 56.5
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.9e-248 862.8 764 57.3
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 5.6e-248 861.3 764 57.7
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.6e-247 859.8 746 58.4
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 8.1e-247 857.4 780 56.2
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 6.8e-246 854.4 752 57.8
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 4.4e-245 851.7 772 57.4
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 6.6e-241 837.8 818 53.8
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.6e-239 833.2 758 55.3
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 6.9e-238 827.8 747 55.3
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.5e-237 826.6 757 57.5
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.8e-236 822.0 758 54.4
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 8.4e-236 820.8 757 55.2
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 5.8e-229 798.1 558 70.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.4e-228 794.7 537 73.2
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 4.2e-227 792.0 708 57.2
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.4e-222 776.2 746 52.1
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 3.2e-219 765.8 752 54.1
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 2.3e-217 759.6 579 63.0
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 2.7e-210 736.1 612 60.6
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 5.3e-206 721.8 458 74.0
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.4e-201 707.2 766 50.3
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 7.9e-194 681.4 762 48.7
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 4.8e-191 672.2 480 70.8
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.4e-187 660.6 790 45.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 5.7e-184 648.7 810 44.7
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.3e-180 637.5 610 54.3
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.0e-177 627.9 801 43.9
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.3e-169 600.1 533 58.3
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.0e-165 587.0 611 50.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-164 583.2 759 44.7
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 5.2e-161 572.4 534 56.0
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-158 563.9 727 45.1
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 6.1e-154 548.9 805 41.1
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.8e-152 542.3 759 43.2
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 9.2e-150 535.0 441 62.4
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 9.2e-150 535.0 441 62.4
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-142 508.8 759 42.7
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-134 483.4 481 51.8
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 4.1e-134 483.0 276 81.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 7.1e-134 482.3 312 74.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-128 464.5 756 37.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-125 454.1 614 43.6
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 7.6e-120 435.6 359 61.3
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-118 429.1 618 43.0
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 3.0e-100 370.5 431 46.9
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.5e-99 367.5 312 61.5
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-97 359.4 762 33.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.6e-85 320.5 632 37.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-82 311.2 249 60.6
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.6e-80 304.3 407 42.3
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 4.5e-80 303.5 160 86.2
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 5.0e-79 300.1 452 40.0
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.3e-76 291.2 674 32.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-73 282.0 568 33.8
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 6.7e-68 263.1 243 53.1
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 5.7e-67 260.0 274 49.6
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 7.5e-67 259.6 214 59.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.1e-65 253.8 139 83.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-54 216.5 191 55.0
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 7.5e-51 206.5 724 27.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.7e-48 198.0 192 53.1
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.6e-47 193.4 164 61.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 8.6e-47 193.0 187 50.3
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.5e-46 192.2 201 52.7
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-46 191.4 159 56.6
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 6.1e-45 186.8 109 81.7
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.4e-41 175.6 128 71.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.4e-41 175.6 344 33.4
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 9.2e-41 172.9 108 77.8
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 5.6e-38 163.7 186 45.2
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-37 162.5 149 59.1
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 2.3e-31 141.7 280 31.8
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.3e-28 131.7 89 69.7
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 8.9e-28 129.8 84 72.6
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.7e-26 125.6 86 66.3
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.3e-26 123.2 82 75.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-24 117.9 456 26.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 6.6e-23 113.6 78 71.8
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.5e-22 112.5 128 49.2
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 4.0e-20 104.4 109 47.7
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 6.8e-12 77.0 58 62.1
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 2.2e-10 72.0 77 48.1
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-08 65.9 71 49.3
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 3.9e-07 61.2 128 35.2
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.6e-06 57.4 45 62.2


User provided reference genes

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