Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.6e-302 1042.7 903 100.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 7.4e-199 698.4 618 70.2
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 5.3e-197 692.2 613 72.3
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.6e-196 690.6 612 71.6
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.2e-195 686.8 635 67.2
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 7.2e-194 681.8 619 69.0
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.7e-193 679.9 645 70.2
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.0e-192 677.9 675 63.1
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.5e-191 674.1 609 71.3
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 5.7e-191 672.2 564 71.6
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 6.3e-190 668.7 610 70.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 7.0e-189 665.2 566 73.1
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 7.0e-189 665.2 610 70.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 9.1e-189 664.8 650 68.8
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.0e-188 663.7 631 66.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 7.7e-188 661.8 611 67.6
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 6.5e-187 658.7 616 66.9
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 6.5e-187 658.7 640 66.9
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.9e-186 657.1 610 69.0
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 7.2e-186 655.2 614 72.0
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.2e-185 654.4 641 68.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.1e-185 653.7 615 65.4
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.0e-184 651.4 605 66.9
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 5.2e-184 649.0 630 65.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 8.8e-184 648.3 609 68.1
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.4e-183 646.4 611 71.5
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 7.5e-183 645.2 628 68.8
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.8e-182 643.3 608 66.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.6e-180 637.5 631 64.7
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.0e-180 637.1 612 68.5
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.9e-180 635.6 648 67.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.7e-180 635.2 633 61.1
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.7e-179 634.0 636 62.4
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.7e-179 634.0 651 61.4
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 2.9e-179 633.3 630 70.0
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.5e-178 630.9 610 67.5
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 2.5e-178 630.2 629 64.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.5e-178 630.2 648 67.1
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.5e-178 630.2 599 65.6
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.2e-178 629.4 648 69.3
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.8e-177 626.7 612 64.4
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 4.7e-177 625.9 564 68.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.4e-176 624.4 552 73.0
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.8e-176 624.0 564 68.3
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 2.0e-175 620.5 561 69.7
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 9.8e-175 618.2 620 62.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.2e-174 617.1 610 63.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.8e-174 616.7 620 62.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.3e-174 615.1 627 60.8
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 4.1e-173 612.8 610 66.9
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 5.4e-173 612.5 620 64.2
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 5.4e-173 612.5 610 64.1
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.0e-173 612.1 608 64.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.5e-172 609.8 634 60.9
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.5e-172 609.8 560 66.2
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 4.5e-172 609.4 643 64.5
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.0e-171 608.2 638 65.5
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 1.3e-171 607.8 643 63.9
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.9e-170 604.0 493 72.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 3.3e-170 603.2 610 64.8
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.1e-169 600.5 623 66.5
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.0e-168 598.2 629 62.2
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 6.8e-168 595.5 636 61.0
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.2e-167 594.7 564 62.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 2.6e-167 593.6 610 64.1
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 7.5e-167 592.0 603 64.7
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 6.4e-166 589.0 619 63.2
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 8.3e-166 588.6 625 62.6
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.2e-165 586.6 566 62.7
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.3e-163 581.3 610 63.8
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.3e-163 581.3 610 63.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.3e-163 580.5 610 63.6
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 6.6e-163 578.9 621 62.6
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.1e-162 578.2 610 63.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.1e-162 578.2 499 72.1
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.5e-162 577.8 621 63.9
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.5e-162 577.0 617 61.8
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.5e-162 577.0 618 62.6
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 5.6e-162 575.9 601 62.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 7.3e-162 575.5 617 60.6
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-161 574.3 610 62.1
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.8e-161 573.5 606 56.8
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 3.6e-161 573.2 630 61.4
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.1e-160 571.6 617 59.5
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 5.2e-160 569.3 600 61.5
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 9.8e-159 565.1 535 67.3
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-158 564.7 521 63.0
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.3e-158 564.7 521 63.0
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 3.7e-158 563.1 521 62.8
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 6.4e-158 562.4 521 63.0
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 6.4e-158 562.4 521 62.0
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 3.0e-155 553.5 520 69.2
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 8.6e-155 552.0 626 57.5
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.0e-152 543.1 502 67.1
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 4.0e-152 543.1 610 58.9
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 7.1e-149 532.3 602 58.6
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 4.6e-148 529.6 619 62.7
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.0e-147 528.5 619 62.5
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 7.3e-146 522.3 619 57.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 5.8e-127 459.5 638 55.5
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.1e-124 451.1 449 67.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.6e-116 424.9 310 75.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.5e-114 418.3 614 56.8
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 5.7e-114 416.4 441 68.0
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 5.7e-114 416.4 515 59.0
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 6.2e-113 412.9 585 53.7
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.2e-103 382.1 286 74.5
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.7e-89 335.1 221 74.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 3.8e-78 297.4 538 44.8
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.1e-76 291.6 288 67.0
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 8.8e-75 286.2 513 44.2
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.2e-69 267.3 291 63.9
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 4.0e-67 260.8 331 58.6
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.7e-65 255.4 515 47.6
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.2e-63 249.2 523 45.7
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.4e-59 235.7 500 40.6
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.2e-58 232.6 335 49.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 5.7e-58 230.3 231 53.7
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 7.5e-58 229.9 176 69.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 4.1e-56 224.2 275 56.7
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 2.7e-55 221.5 173 80.3
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 1.3e-49 202.6 209 59.8
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-24 119.4 69 84.1
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 9.3e-24 116.7 88 63.6
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.3e-22 112.1 85 65.9
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 3.8e-17 94.7 58 77.6
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 3.5e-15 88.2 367 37.6
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.3e-14 86.3 145 46.9
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.7e-14 85.9 104 50.0
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.1e-13 83.2 245 40.4
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 9.6e-13 80.1 82 72.0
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 9.6e-13 80.1 419 26.0
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.8e-12 77.8 98 50.0
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.1e-11 76.6 155 39.4
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.4e-11 75.5 104 47.1
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.1e-08 66.6 76 71.1
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 1.1e-08 66.6 245 37.1
SGA_v2.0_scaffold181G39781 Striga asiatica HOM05D001023 ORTHO05D000912 2.3e-06 58.9 97 38.1
CAN.G904.19 Capsicum annuum HOM05D001023 ORTHO05D000912 3.0e-06 58.5 97 38.1
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 3.0e-06 58.5 97 40.2
CARHR043940 Cardamine hirsuta HOM05D001023 ORTHO05D000912 6.7e-06 57.4 97 36.1


User provided reference genes

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