Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g07660 Coffea canephora HOM05D003362 ORTHO05D003783 1.7e-51 205.7 102 100.0
MD01G1118300 Malus domestica HOM05D003362 ORTHO05D003783 3.1e-29 131.7 98 65.3
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 4.1e-29 131.3 102 68.6
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 1.6e-28 129.4 95 66.3
CSS0010290 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 3.5e-28 128.3 90 67.8
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 1.0e-27 126.7 100 61.0
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 1.7e-27 125.9 94 63.8
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 3.8e-27 124.8 100 62.0
CSS0034202 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 5.0e-27 124.4 82 69.5
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 5.0e-27 124.4 89 67.4
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 5.0e-27 124.4 82 72.0
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 5.0e-27 124.4 89 67.4
AUR62015655 Chenopodium quinoa HOM05D003362 ORTHO05D003783 8.6e-27 123.6 89 67.4
AUR62020547 Chenopodium quinoa HOM05D003362 ORTHO05D003783 8.6e-27 123.6 100 62.0
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 8.6e-27 123.6 89 66.3
Actinidia38220 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.1e-26 123.2 83 68.7
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 2.5e-26 122.1 89 64.0
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 3.3e-26 121.7 84 70.2
Eucgr.F03816 Eucalyptus grandis HOM05D003362 ORTHO05D003783 4.2e-26 121.3 98 63.3
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 4.2e-26 121.3 85 64.7
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 4.2e-26 121.3 89 62.9
Eucgr.J01152 Eucalyptus grandis HOM05D003362 ORTHO05D003783 5.5e-26 120.9 94 61.7
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 7.2e-26 120.6 89 66.3
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 9.5e-26 120.2 94 62.8
DCAR_027694 Daucus carota HOM05D003362 ORTHO05D003783 9.5e-26 120.2 89 65.2
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 1.2e-25 119.8 94 60.6
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 1.2e-25 119.8 88 63.6
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 1.2e-25 119.8 85 64.7
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 1.2e-25 119.8 101 60.4
Actinidia02995 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.6e-25 119.4 100 60.0
EL10Ac2g03488 Beta vulgaris HOM05D003362 ORTHO05D003783 2.1e-25 119.0 100 60.0
Cpa.g.sc1855.1 Carica papaya HOM05D003362 ORTHO05D003783 2.1e-25 119.0 95 61.1
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 2.8e-25 118.6 89 61.8
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 3.6e-25 118.2 89 64.0
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 6.1e-25 117.5 90 62.2
Peaxi162Scf00006g00088 Petunia axillaris HOM05D003362 ORTHO05D003783 6.1e-25 117.5 100 55.0
vmacro07205 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 8.0e-25 117.1 82 65.9
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 1.0e-24 116.7 89 62.9
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.0e-24 116.7 94 59.6
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 1.0e-24 116.7 100 61.0
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 1.0e-24 116.7 95 62.1
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 1.4e-24 116.3 95 62.1
Rhsim01G0013100 Rhododendron simsii HOM05D003362 ORTHO05D003783 1.4e-24 116.3 98 60.2
Atru.chr12.582 Acer truncatum HOM05D003362 ORTHO05D003783 1.8e-24 115.9 89 65.2
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 2.3e-24 115.5 101 58.4
Gohir.D13G021000 Gossypium hirsutum HOM05D003362 ORTHO05D003783 2.3e-24 115.5 94 59.6
Gorai.013G023400 Gossypium raimondii HOM05D003362 ORTHO05D003783 2.3e-24 115.5 94 59.6
Sabra10G0164900 Salix brachista HOM05D003362 ORTHO05D003783 2.3e-24 115.5 89 59.6
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 3.0e-24 115.2 94 59.6
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 4.0e-24 114.8 91 62.6
Duzib114G0926 Durio zibethinus HOM05D003362 ORTHO05D003783 4.0e-24 114.8 101 59.4
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 4.0e-24 114.8 94 57.4
HanXRQChr15g0496871 Helianthus annuus HOM05D003362 ORTHO05D003783 4.0e-24 114.8 91 61.5
ECA232G4190 Erigeron canadensis HOM05D003362 ORTHO05D003783 5.2e-24 114.4 93 60.2
MBI14_g16292_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 5.2e-24 114.4 94 59.6
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 6.8e-24 114.0 94 56.4
Lsat_1_v5_gn_9_66221 Lactuca sativa HOM05D003362 ORTHO05D003783 1.2e-23 113.2 89 60.7
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 1.2e-23 113.2 94 60.6
Eucgr.J01153 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.5e-23 112.8 94 55.3
Nitab4.5_0000027g0470 Nicotiana tabacum HOM05D003362 ORTHO05D003783 2.0e-23 112.5 95 58.9
Prupe.2G225200 Prunus persica HOM05D003362 ORTHO05D003783 2.6e-23 112.1 80 65.0
FAN01G2140 Fragaria x ananassa HOM05D022263 ORTHO05D003783 3.4e-23 111.7 80 63.8
CiPaw.01G280400 Carya illinoinensis HOM05D003362 ORTHO05D003783 4.4e-23 111.3 101 57.4
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 4.4e-23 111.3 83 61.4
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 4.4e-23 111.3 89 60.7
PGR044G1348 Punica granatum HOM05D003362 ORTHO05D003783 4.4e-23 111.3 94 58.5
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 5.7e-23 110.9 79 67.1
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 9.8e-23 110.2 83 61.4
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 1.3e-22 109.8 83 63.9
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 1.7e-22 109.4 100 53.0
arahy.Tifrunner.gnm1.ann1.VJQ7J1 Arachis hypogaea HOM05D003362 ORTHO05D003783 1.7e-22 109.4 83 60.2
THA.LOC104825165 Tarenaya hassleriana HOM05D003362 ORTHO05D003783 1.7e-22 109.4 88 54.5
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 2.2e-22 109.0 84 59.5
HanXRQChr15g0496901 Helianthus annuus HOM05D003362 ORTHO05D003783 2.8e-22 108.6 94 57.4
CDE07G1335 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 3.7e-22 108.2 82 59.8
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 3.7e-22 108.2 89 59.6
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 8.3e-22 107.1 80 62.5
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 8.3e-22 107.1 94 56.4
HanXRQChr15g0496881 Helianthus annuus HOM05D003362 ORTHO05D003783 1.1e-21 106.7 91 57.1
Medtr1g115870 Medicago truncatula HOM05D003362 ORTHO05D003783 1.8e-21 105.9 83 55.4
Lj5g0014981 Lotus japonicus HOM05D003362 ORTHO05D003783 2.4e-21 105.5 84 59.5
ClCG09G020280 Citrullus lanatus HOM05D003362 ORTHO05D003783 4.1e-21 104.8 100 53.0
Ca_11318_v3 Cicer arietinum L. HOM05D003362 ORTHO05D003783 5.4e-21 104.4 83 59.0
CARHR165150 Cardamine hirsuta HOM05D003362 ORTHO05D003783 7.0e-21 104.0 93 54.8
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 9.2e-21 103.6 87 59.8
arahy.Tifrunner.gnm1.ann1.TJ3PHW Arachis hypogaea HOM05D003362 ORTHO05D003783 9.2e-21 103.6 80 60.0
Medtr1g115890 Medicago truncatula HOM05D003362 ORTHO05D003783 1.2e-20 103.2 95 53.7
Rhsim03G0098600 Rhododendron simsii HOM05D003362 ORTHO05D003783 1.2e-20 103.2 90 54.4
Carub.0005s2175 Capsella rubella HOM05D003362 ORTHO05D003783 1.6e-20 102.8 87 56.3
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 1.6e-20 102.8 100 52.0
Psat6g237840 Pisum sativum HOM05D003362 ORTHO05D003783 2.0e-20 102.4 83 55.4
SalBow1G4850 Salvia bowleyana HOM05D003362 ORTHO05D003783 2.0e-20 102.4 83 55.4
VMungo0720G0350 Vigna mungo HOM05D003362 ORTHO05D003783 2.0e-20 102.4 89 56.2
AL5G36240 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 2.7e-20 102.1 83 57.8
Glyma.20G241500 Glycine max HOM05D003362 ORTHO05D003783 2.7e-20 102.1 83 59.0
Sed0018943 Sechium edule HOM05D003362 ORTHO05D003783 2.7e-20 102.1 100 51.0
AT3G55120 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 3.5e-20 101.7 88 54.5
BcaC07g39836 Brassica carinata HOM05D003362 ORTHO05D003783 3.5e-20 101.7 100 51.0
C08p30380 Brassica napus HOM05D003362 ORTHO05D003783 3.5e-20 101.7 100 51.0
BolC8t50659H Brassica oleracea HOM05D003362 ORTHO05D003783 3.5e-20 101.7 100 51.0
Lsat_1_v5_gn_2_76781 Lactuca sativa HOM05D003362 ORTHO05D003783 3.5e-20 101.7 93 55.9
CsaV3_5G026140 Cucumis sativus L. HOM05D003362 ORTHO05D003783 5.9e-20 100.9 91 53.8
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 5.9e-20 100.9 95 54.7
Phvul.007G008600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 5.9e-20 100.9 89 55.1
SalBow3G3107 Salvia bowleyana HOM05D003362 ORTHO05D003783 5.9e-20 100.9 83 55.4
BcaB02g07695 Brassica carinata HOM05D003362 ORTHO05D003783 7.8e-20 100.5 100 51.0
A07p22450 Brassica napus HOM05D003362 ORTHO05D003783 7.8e-20 100.5 99 51.5
BolC6t37453H Brassica oleracea HOM05D003362 ORTHO05D003783 7.8e-20 100.5 99 51.5
BraA07t29921Z Brassica rapa HOM05D003362 ORTHO05D003783 7.8e-20 100.5 99 51.5
Lj5g0004759 Lotus japonicus HOM05D003362 ORTHO05D003783 7.8e-20 100.5 90 55.6
Sp5g07300 Schrenkiella parvula HOM05D003362 ORTHO05D003783 7.8e-20 100.5 100 50.0
Thhalv10010658m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 1.0e-19 100.1 88 52.3
SalBow3G2785 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.0e-19 100.1 83 55.4
BcaC08g44726 Brassica carinata HOM05D003362 ORTHO05D003783 1.7e-19 99.4 99 51.5
C06p22640 Brassica napus HOM05D003362 ORTHO05D003783 1.7e-19 99.4 99 51.5
Psat6g238360 Pisum sativum HOM05D003362 ORTHO05D003783 1.7e-19 99.4 89 52.8
arahy.Tifrunner.gnm1.ann1.425ZXH Arachis hypogaea HOM05D003362 ORTHO05D003783 2.3e-19 99.0 93 49.5
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 2.3e-19 99.0 89 53.9
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 2.9e-19 98.6 93 51.6
Aqoxy2G01950 Aquilegia oxysepala HOM05D003362 ORTHO05D003783 3.8e-19 98.2 94 57.4
BcaB05g22784 Brassica carinata HOM05D003362 ORTHO05D003783 3.8e-19 98.2 82 56.1
VMungo0720G3152 Vigna mungo HOM05D003362 ORTHO05D003783 3.8e-19 98.2 83 54.2
BraA09t40267Z Brassica rapa HOM05D003362 ORTHO05D003783 5.0e-19 97.8 101 50.5
Nn2g10542 Nelumbo nucifera HOM05D003362 ORTHO05D003783 5.0e-19 97.8 80 53.8
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 8.6e-19 97.1 83 53.0
EL10Ac2g03495 Beta vulgaris HOM05D003362 ORTHO05D003783 1.1e-18 96.7 103 53.4
CARHR165140 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.1e-18 96.7 89 48.3
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 1.1e-18 96.7 95 51.6
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.1e-18 96.7 83 54.2
Phvul.003G216600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.1e-18 96.7 89 53.9
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.5e-18 96.3 83 53.0
Lj5g0021768 Lotus japonicus HOM05D003362 ORTHO05D003783 3.3e-18 95.1 82 52.4
Lalb_Chr06g0164121 Lupinus albus HOM05D003362 ORTHO05D003783 3.3e-18 95.1 85 52.9
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 3.3e-18 95.1 85 60.0
TPR.G30359 Trifolium pratense HOM05D003362 ORTHO05D003783 3.3e-18 95.1 101 47.5
A09p48130 Brassica napus HOM05D003362 ORTHO05D003783 4.3e-18 94.7 101 49.5
Lj5g0007558 Lotus japonicus HOM05D003362 ORTHO05D003783 4.3e-18 94.7 90 52.2
PSO407G0338 Papaver somniferum HOM05D003362 ORTHO05D003783 4.3e-18 94.7 80 56.2
Aa31LG10G10040 Aethionema arabicum HOM05D003362 ORTHO05D003783 7.3e-18 94.0 85 54.1
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 7.3e-18 94.0 89 50.6
Medtr1g115820 Medicago truncatula HOM05D003362 ORTHO05D003783 1.6e-17 92.8 86 48.8
Psat6g237920 Pisum sativum HOM05D003362 ORTHO05D003783 1.6e-17 92.8 86 52.3
Sopen05g006090 Solanum pennellii HOM05D003362 ORTHO05D003783 2.1e-17 92.4 71 64.8
Nn2g12996 Nelumbo nucifera HOM05D003362 ORTHO05D003783 2.8e-17 92.0 61 65.6
Peaxi162Scf00038g01957 Petunia axillaris HOM05D003362 ORTHO05D003783 2.8e-17 92.0 72 55.6
Sp2g30475 Schrenkiella parvula HOM05D003362 ORTHO05D003783 6.1e-17 90.9 80 51.2
Medtr1g115850 Medicago truncatula HOM05D003362 ORTHO05D003783 8.0e-17 90.5 105 47.6
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 1.8e-16 89.4 97 49.5
BraA03t15453Z Brassica rapa HOM05D003362 ORTHO05D003783 3.0e-16 88.6 88 48.9
BcaNung04348 Brassica carinata HOM05D003362 ORTHO05D003783 4.0e-16 88.2 89 48.3
C07p61310 Brassica napus HOM05D003362 ORTHO05D003783 4.0e-16 88.2 89 48.3
BolC7t46557H Brassica oleracea HOM05D003362 ORTHO05D003783 4.0e-16 88.2 89 48.3
Carub.0008s2828 Capsella rubella HOM05D003362 ORTHO05D003783 6.8e-16 87.4 93 45.2
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 8.9e-16 87.0 92 51.1
arahy.Tifrunner.gnm1.ann1.6JHV2K Arachis hypogaea HOM05D003362 ORTHO05D003783 2.6e-15 85.5 89 46.1
arahy.Tifrunner.gnm1.ann1.LGAM8W Arachis hypogaea HOM05D003362 ORTHO05D003783 2.6e-15 85.5 89 46.1
AL8G45310 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 1.3e-14 83.2 84 47.6
HPP92_021163 Vanilla planifolia HOM05D003362 ORTHO05D003783 1.3e-14 83.2 83 50.6
Glyma.20G241700 Glycine max HOM05D003362 ORTHO05D003783 1.7e-14 82.8 102 45.1
Thecc.10G060800 Theobroma cacao HOM05D003362 ORTHO05D003783 1.7e-14 82.8 82 51.2
RcHm_v2.0_Chr7g0221421 Rosa chinensis HOM05D003362 ORTHO05D003783 6.4e-14 80.9 65 56.9
AUR62015656 Chenopodium quinoa HOM05D003362 ORTHO05D003783 1.1e-13 80.1 55 65.5
Actinidia09149 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.4e-13 79.7 89 50.6
ATR0759G079 Amborella trichopoda HOM05D003362 ORTHO05D003783 1.8e-13 79.3 82 50.0
Sc06g0001900 Simmondsia chinensis HOM05D003362 ORTHO05D003783 1.6e-12 76.3 67 59.7
TPR.G10384 Trifolium pratense HOM05D003362 ORTHO05D003783 2.7e-12 75.5 54 61.1
BcaC07g39837 Brassica carinata HOM05D003362 ORTHO05D003783 3.5e-12 75.1 101 43.6
BolC8t50661H Brassica oleracea HOM05D003362 ORTHO05D003783 3.5e-12 75.1 101 43.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 4.6e-12 74.7 87 43.7
C08p30390 Brassica napus HOM05D003362 ORTHO05D003783 6.0e-12 74.3 101 43.6
ATR0759G124 Amborella trichopoda HOM05D003362 ORTHO05D003783 1.0e-11 73.6 82 46.3
Thhalv10004922m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 1.0e-11 73.6 87 44.8
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 3.0e-11 72.0 66 56.1
A03p63820 Brassica napus HOM05D003362 ORTHO05D003783 8.6e-11 70.5 97 40.2
BcaB05g22785 Brassica carinata HOM05D003362 ORTHO05D003783 1.5e-10 69.7 101 40.6
Nitab4.5_0005313g0010 Nicotiana tabacum HOM05D003362 ORTHO05D003783 4.3e-10 68.2 54 59.3
BraA09t40269Z Brassica rapa HOM05D003362 ORTHO05D003783 2.8e-09 65.5 87 43.7
A09p48140 Brassica napus HOM05D003362 ORTHO05D003783 3.6e-09 65.1 87 42.5
SMO172G0159 Selaginella moellendorffii HOM05D003362 ORTHO05D003783 1.2e-07 60.1 98 35.7
PSO384G4896 Papaver somniferum HOM05D003362 ORTHO05D003783 2.2e-06 55.8 80 36.2
PSO699G0055 Papaver somniferum HOM05D003362 ORTHO05D003783 2.9e-06 55.5 80 36.2
Rhsim03G0120200 Rhododendron simsii HOM05D003362 ORTHO05D003783 8.3e-06 53.9 35 62.9


User provided reference genes

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