Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 0.0e+00 1968.4 993 100.0
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.1e-171 608.2 1041 38.6
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 9.4e-171 605.1 1060 39.5
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.2e-170 604.7 1087 39.1
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.4e-166 589.3 1085 38.3
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-163 581.6 1043 38.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 9.5e-163 578.6 1027 38.9
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 4.0e-161 573.2 1028 38.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 5.2e-161 572.8 1156 36.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 8.6e-156 555.4 1031 38.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 4.7e-154 549.7 1097 36.1
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.0e-153 548.5 1177 35.8
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.8e-153 547.7 1114 36.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.5e-152 544.7 1073 35.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 2.9e-151 540.4 1109 36.1
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 9.2e-150 535.4 1109 35.7
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.1e-146 524.2 1093 36.6
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 6.4e-143 512.7 1066 36.0
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.6e-141 508.1 1073 35.1
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 5.0e-140 503.1 1084 34.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.6e-138 498.0 1047 35.8
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 8.1e-138 495.7 1044 34.8
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.6e-136 490.7 1099 34.8
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.5e-136 489.2 1032 35.2
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 9.9e-136 488.8 1100 34.5
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 1.4e-134 485.0 1082 33.7
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.1e-134 483.4 1063 33.2
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 9.2e-134 482.3 1077 34.5
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.6e-133 481.5 1096 34.8
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.5e-131 474.9 1086 34.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.2e-130 471.9 1063 33.4
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.3e-127 461.8 1056 34.5
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.1e-126 458.8 1088 33.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 7.1e-126 456.1 1082 33.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 1.2e-125 455.3 1044 35.2
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.7e-124 451.4 1008 34.9
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 6.2e-122 443.0 1079 32.9
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 6.2e-122 443.0 1055 33.9
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-121 441.4 1086 32.9
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 3.4e-120 437.2 1114 31.9
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 3.8e-119 433.7 1081 32.3
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.4e-118 429.9 1186 31.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.6e-117 428.3 1083 31.7
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.6e-117 428.3 1071 32.4
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.0e-116 425.6 1166 31.7
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.1e-115 422.2 1025 33.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.5e-115 421.0 1072 31.5
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 2.5e-115 421.0 1082 33.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 6.2e-114 416.4 1191 30.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 3.4e-112 410.6 1074 31.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.6e-112 409.5 1093 30.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 3.2e-110 404.1 1106 29.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 9.3e-110 402.5 1096 32.4
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.6e-109 400.2 1072 30.6
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.0e-108 399.1 1113 29.7
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.8e-108 398.3 1060 31.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 5.1e-108 396.7 1083 31.6
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.5e-107 395.2 1071 30.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.0e-105 386.0 1001 31.8
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 7.6e-104 382.9 1048 31.0
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.9e-103 380.9 1016 32.6
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.9e-103 380.2 1060 31.0
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.9e-102 378.3 1020 32.6
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 5.5e-102 376.7 957 32.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.6e-101 375.2 1054 31.0
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 1.5e-99 368.6 1050 31.3
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.9e-99 368.2 1029 31.5
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.5e-99 367.9 1168 30.2
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.5e-99 367.9 1067 30.5
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.6e-99 366.7 1030 30.0
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.5e-96 358.6 1017 31.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.0e-92 345.9 1050 30.5
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.0e-92 345.9 1007 31.0
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.1e-91 342.4 872 32.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.8e-90 337.8 495 42.8
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.1e-89 335.9 1005 31.1
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 2.6e-88 331.3 1023 31.5
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.4e-86 325.5 776 35.3
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 7.2e-86 323.2 1087 29.6
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 7.2e-86 323.2 1020 30.5
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 9.4e-86 322.8 809 33.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.0e-84 317.8 719 35.2
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 5.1e-84 317.0 719 35.2
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 8.8e-84 316.2 1050 28.8
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 8.8e-84 316.2 1029 30.2
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.1e-83 315.8 982 31.1
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-83 315.1 671 36.1
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.1e-81 309.3 752 34.7
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.5e-80 305.4 667 35.8
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 7.2e-78 296.6 644 35.4
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-73 282.0 646 34.7
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.0e-72 278.5 670 32.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.2e-69 269.2 1066 28.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.8e-65 255.4 1127 25.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.7e-63 248.8 461 36.9
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 5.7e-59 233.8 975 28.3
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.7e-58 232.3 319 42.9
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.2e-58 231.9 1007 27.2
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 4.5e-56 224.2 525 34.9
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.0e-55 223.0 495 36.0
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.6e-53 215.7 251 49.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.2e-50 205.3 470 34.5
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 6.3e-50 203.8 585 31.6
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 7.0e-49 200.3 109 90.8
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.7e-48 198.4 702 27.5
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 1.6e-45 189.1 289 38.4
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.2e-43 183.0 160 58.1
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.4e-43 181.0 224 47.3
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 6.3e-42 177.2 656 26.4
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 7.8e-40 170.2 313 35.5
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.0e-39 169.9 997 24.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.3e-39 169.5 676 27.4
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 1.7e-34 152.5 211 45.0
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 2.2e-34 152.1 782 24.9
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 2.9e-34 151.8 432 31.7
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.7e-34 151.4 489 30.7
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 6.4e-34 150.6 136 54.4
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.9e-33 149.1 207 42.5
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.6e-32 146.0 139 55.4
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.9e-31 141.4 142 52.1
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 3.9e-31 141.4 975 24.3
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 7.3e-30 137.1 80 85.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 7.3e-30 137.1 135 54.1
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.6e-27 128.6 169 45.0
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.9e-26 125.2 312 29.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.4e-25 120.9 677 25.4
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.3e-23 115.5 338 28.7
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 5.1e-23 114.4 364 28.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 2.5e-22 112.1 129 45.7
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.3e-22 111.3 455 26.8
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.4e-20 106.3 623 24.7
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.8e-20 105.9 427 29.0
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.5e-19 102.8 714 23.7
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.1e-17 96.7 450 24.9
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.2e-16 93.2 702 22.6
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.1e-16 92.4 71 63.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.3e-15 89.0 454 26.7
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 5.1e-15 87.8 208 35.6
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 2.4e-12 79.0 170 33.5
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 7.1e-09 67.4 705 21.0
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 7.1e-09 67.4 433 22.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.7e-08 65.5 714 21.3
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 8.7e-07 60.5 87 37.9


User provided reference genes

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