Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 2549.2 1355 100.0
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1692.2 1373 68.2
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1689.5 1362 67.7
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1679.1 1370 66.2
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1657.1 1357 66.1
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1652.1 1359 66.8
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1645.2 1368 66.4
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1644.4 1359 65.9
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1639.4 1357 65.5
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1607.8 1347 64.9
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1604.7 1373 65.8
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1594.7 1372 64.6
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1590.1 1362 65.1
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1581.6 1372 65.1
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1572.0 1396 63.7
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1568.5 1373 64.6
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1564.7 1377 63.6
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1560.4 1358 64.1
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1558.1 1380 63.8
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1557.3 1410 62.3
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1539.6 1373 62.7
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1535.0 1381 62.6
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1534.6 1360 62.2
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1526.9 1382 61.9
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1524.2 1367 62.8
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1518.1 1372 62.2
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1517.7 1368 62.5
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1507.3 1371 61.2
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1502.3 1369 61.2
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1499.2 1378 61.5
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1496.1 1383 61.2
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1493.8 1365 62.0
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1493.0 1358 61.9
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1479.5 1373 60.7
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1472.6 1387 60.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1463.7 1371 60.3
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1463.0 1372 60.7
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1459.9 1366 59.8
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1459.5 1341 61.4
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1459.1 1377 59.3
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1455.3 1367 59.2
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1446.4 1371 59.9
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1432.9 1379 58.5
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1431.0 1376 58.1
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1428.3 1371 58.5
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1427.9 1372 59.5
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1426.8 1403 59.2
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1426.4 1372 59.4
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1420.2 1363 59.4
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1419.4 1376 58.6
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1414.4 1386 57.6
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1411.7 1371 57.4
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1411.0 1422 57.2
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1398.3 1374 58.6
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1397.5 1316 61.1
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1396.7 1380 57.7
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1395.6 1383 58.9
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1392.5 1367 58.6
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1391.3 1369 58.3
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1390.6 1365 57.9
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1387.9 1346 59.2
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1387.1 1373 58.3
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1386.3 1380 57.3
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1383.2 1387 57.7
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1380.5 1367 57.6
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1374.4 1381 56.7
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1372.8 1370 57.7
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1371.3 1374 57.9
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1370.9 1377 56.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1369.4 1233 62.1
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1365.9 1367 57.6
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1364.0 1373 57.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1361.3 1374 57.5
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1381 55.7
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1357.0 1364 57.8
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1355.5 1204 61.7
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1354.7 1380 56.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1352.8 1378 56.9
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1339.3 1302 57.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1322.8 1380 55.4
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1317.4 1366 55.0
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1312.7 1412 54.2
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1312.0 1259 59.3
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1305.4 1380 54.4
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1293.9 1377 55.3
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1286.2 1309 56.9
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1266.1 1430 54.5
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1265.8 1310 55.6
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1234.6 1383 51.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1231.9 1074 62.0
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1229.2 1204 58.0
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1220.7 1215 57.4
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1218.8 1085 63.2
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1193.7 1379 52.4
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1157.1 1372 51.3
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1152.5 1081 59.0
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.4e-310 1068.1 1381 48.0
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 2.7e-309 1065.8 998 60.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.7e-303 1046.6 1215 51.5
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 3.6e-298 1028.9 1359 46.7
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 8.9e-289 997.7 1363 46.7
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 5.4e-286 988.4 1341 47.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 4.3e-283 978.8 967 56.8
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.1e-275 954.1 1029 53.8
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.3e-252 877.5 972 52.8
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 7.4e-251 871.7 775 61.3
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.2e-250 868.6 794 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.9e-238 830.5 1436 39.5
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.4e-235 818.5 689 62.1
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 6.9e-233 812.0 1190 44.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 7.7e-232 808.5 859 55.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 1.4e-222 777.7 1140 43.2
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 5.7e-219 765.8 1083 46.0
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 2.8e-218 763.5 1526 37.0
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.1e-198 698.4 859 48.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-177 628.2 500 68.2
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 9.9e-163 578.9 454 68.7
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.1e-161 575.5 1251 34.1
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 5.3e-156 556.6 668 50.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.9e-145 521.5 1638 29.3
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 2.1e-144 518.1 404 69.1
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.1e-132 477.6 409 64.5
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.6e-104 385.6 339 63.1
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 2.7e-104 384.8 341 64.8
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.1e-92 344.7 333 56.5
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.8e-85 321.6 373 52.8
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 6.3e-85 320.5 413 48.7
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.8e-76 292.4 274 64.2
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 8.3e-69 266.9 1445 24.3
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.2e-64 253.1 368 41.0
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 2.1e-56 225.7 603 33.8
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 5.1e-50 204.5 229 54.6
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 1.1e-44 186.8 155 61.3
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 6.4e-37 161.0 116 69.0
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 2.1e-35 156.0 231 40.7
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 7.6e-30 137.5 82 80.5
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.5e-27 128.6 114 62.3
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 1.6e-24 119.8 114 52.6
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.8e-23 116.3 87 67.8
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 9.0e-23 114.0 122 56.6
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.9e-21 108.2 187 41.2
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.5e-13 81.3 84 51.2
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.5e-13 81.3 84 51.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.3e-12 77.4 70 55.7
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.8e-10 73.2 79 57.0
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 6.7e-10 71.2 50 70.0
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 1.8e-07 63.2 89 40.4
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 3.1e-07 62.4 58 55.2
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.2e-06 60.5 49 57.1
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 7.7e-06 57.8 144 27.1


User provided reference genes

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