Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 2148.2 1139 100.0
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1539.2 1144 73.3
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1528.5 1151 72.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1514.2 1149 72.4
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1155 70.0
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1512.7 1140 71.7
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1511.1 1140 72.1
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1506.5 1137 71.2
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1506.1 1141 71.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1504.2 1148 71.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1501.9 1149 69.3
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1497.3 1146 69.5
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1495.7 1137 71.9
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1492.6 1150 71.1
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1492.2 1138 69.9
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1491.1 1137 71.8
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1487.6 1151 71.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1480.7 1135 70.7
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1476.8 1135 69.3
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1471.4 1143 68.1
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1468.8 1129 68.8
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1465.3 1165 67.1
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1463.7 1161 69.1
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1463.7 1139 69.1
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1462.6 1178 68.8
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1462.6 1132 70.1
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1459.9 1134 69.0
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1457.6 1150 69.5
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1453.7 1173 68.7
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1452.2 1138 69.2
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1450.6 1131 69.7
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1449.5 1148 67.3
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1446.8 1134 67.7
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1444.5 1148 69.9
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1441.0 1174 66.4
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1438.3 1162 67.0
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1160 67.1
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1138 68.9
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1436.4 1135 70.4
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1435.6 1175 66.6
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1434.9 1160 69.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1154 69.4
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1154 69.4
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1432.2 1153 67.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1431.8 1132 67.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1424.8 1145 69.5
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1424.5 1145 69.2
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1422.1 1134 69.8
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1421.8 1155 68.5
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1131 69.4
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1420.2 1141 68.8
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1419.4 1153 66.4
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1415.2 1161 66.1
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1414.1 1155 68.4
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1412.5 1136 69.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1410.2 1140 67.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1406.0 1135 68.5
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1403.3 1130 68.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1135 65.4
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1112 68.7
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1398.6 1196 65.0
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1140 67.5
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1388.6 1141 67.0
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1385.2 1162 66.9
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1166 64.8
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1144 66.2
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1144 66.9
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1368.2 1142 67.1
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1367.8 1140 64.6
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1366.3 1144 66.9
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1365.5 1144 66.1
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1362.4 1145 65.8
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1359.4 1155 65.5
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1357.4 1152 65.5
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1355.9 1155 65.3
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1354.7 1152 65.5
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1353.2 1157 65.3
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1352.0 1155 65.3
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1345.5 1160 65.0
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1344.3 1158 64.4
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1342.0 1132 66.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1335.5 1142 63.0
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1332.4 1140 63.3
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1322.0 1130 66.3
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1320.1 1201 62.1
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1314.3 1158 63.2
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1263.8 895 75.8
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1230.3 938 72.7
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1209.9 1029 66.1
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1094.7 1240 51.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1082.0 1208 53.5
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 7.0e-311 1070.8 1198 52.9
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.8e-306 1056.2 911 64.0
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.4e-297 1025.0 747 69.9
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.6e-291 1006.5 1151 52.5
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.1e-267 926.4 742 66.8
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.6e-262 910.2 589 79.3
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.8e-258 894.8 590 81.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.9e-252 876.7 1387 41.0
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.5e-236 823.9 519 81.7
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 7.4e-236 821.6 519 81.3
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.6e-222 775.8 519 77.6
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 5.3e-218 762.3 621 65.7
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.1e-204 718.0 607 62.3
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-186 658.3 590 62.0
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 3.7e-171 606.7 1153 37.6
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.5e-169 600.1 565 61.2
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 5.0e-168 596.3 556 59.2
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.0e-165 586.6 538 58.9
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-150 538.5 467 65.1
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 4.1e-146 523.5 536 55.2
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 7.1e-146 522.7 394 70.1
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 7.8e-129 466.1 324 74.1
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.6e-121 441.8 319 73.4
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.1e-109 401.0 468 51.7
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 7.6e-108 396.4 1188 28.7
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.7e-105 387.9 547 44.2
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.7e-94 352.1 358 53.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.1e-93 347.8 371 55.8
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-90 339.3 385 53.5
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 7.9e-89 333.2 1180 27.5
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.6e-84 318.2 216 76.4
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 5.2e-80 303.9 422 48.1
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 4.1e-77 294.3 261 55.2
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.7e-70 272.3 239 58.6
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 4.5e-68 264.2 208 63.9
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 4.2e-66 257.7 149 88.6
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.0e-64 253.1 147 85.0
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.8e-64 250.0 181 70.7
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-61 242.3 202 62.4
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 5.9e-60 237.3 256 52.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 5.2e-56 224.2 361 42.1
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 4.1e-53 214.5 377 40.6
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-52 213.0 377 40.6
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 7.8e-52 210.3 377 40.1
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.1e-50 206.5 106 97.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 7.3e-50 203.8 113 90.3
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-48 199.1 111 90.1
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 4.0e-48 198.0 113 88.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 7.5e-47 193.7 113 86.7
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 9.8e-47 193.4 113 86.7
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-43 183.0 109 86.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-42 177.9 106 86.8
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.6e-39 168.7 589 27.8
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.4e-39 168.3 99 85.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.3e-38 166.4 97 85.6
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.3e-38 166.4 269 43.5
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.3e-38 166.4 172 54.7
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 4.7e-33 147.9 82 91.5
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.9e-29 136.0 149 47.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.4e-29 135.6 113 60.2
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.3e-22 113.2 75 77.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.8e-22 111.7 75 76.0
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 3.2e-21 108.6 62 82.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 7.1e-21 107.5 73 69.9
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.0e-19 103.6 91 63.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.9e-19 101.7 77 64.9
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.9e-18 99.4 142 49.3
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 1.7e-06 59.7 56 55.4


User provided reference genes

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