Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 2.3e-257 891.7 458 100.0
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.1e-141 505.0 406 64.0
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.0e-139 500.0 406 63.5
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.4e-137 493.8 413 62.0
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.4e-137 493.0 415 61.9
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 4.1e-137 492.3 413 61.7
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 5.4e-137 491.9 413 61.5
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 5.9e-136 488.4 413 61.3
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 6.6e-135 485.0 427 60.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 6.6e-135 485.0 430 60.7
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 3.3e-134 482.6 413 61.3
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 4.3e-134 482.3 411 59.9
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.6e-134 481.9 414 59.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 5.6e-134 481.9 433 58.7
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 2.8e-133 479.6 413 59.1
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.2e-131 474.2 420 59.0
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.0e-131 473.4 411 57.9
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.7e-130 470.3 408 58.1
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.2e-130 469.9 406 60.3
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 4.1e-129 465.7 416 57.9
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.0e-127 461.1 414 58.9
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.7e-127 460.3 424 56.1
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 3.9e-127 459.1 432 56.5
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.9e-126 456.8 448 54.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.5e-126 456.4 413 58.6
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 3.3e-126 456.1 421 56.3
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 5.6e-126 455.3 415 58.6
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.1e-124 451.1 413 58.8
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-124 450.7 404 58.2
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-124 449.9 411 56.0
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-124 449.9 412 56.3
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.0e-124 449.1 405 57.5
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 5.2e-124 448.7 419 55.4
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 6.8e-124 448.4 410 57.8
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 6.8e-124 448.4 413 58.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 2.6e-123 446.4 382 60.7
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 3.4e-123 446.0 417 55.9
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 4.4e-123 445.7 412 58.0
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 5.8e-123 445.3 351 64.1
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 9.8e-123 444.5 401 57.9
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 9.8e-123 444.5 439 56.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.9e-122 443.0 385 59.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.9e-122 442.2 408 56.4
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 8.3e-122 441.4 406 55.9
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.1e-121 441.0 413 56.4
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.9e-121 440.3 416 56.0
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 3.2e-121 439.5 419 53.9
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 5.4e-121 438.7 405 56.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.0e-120 436.8 421 57.2
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 3.5e-120 436.0 413 56.4
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.6e-120 435.6 429 54.1
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 6.0e-120 435.3 414 56.3
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.3e-119 434.1 418 53.1
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.7e-119 433.7 427 53.6
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 3.9e-119 432.6 409 56.7
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.0e-119 432.2 414 54.6
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.6e-119 431.8 413 54.7
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-118 430.6 413 54.2
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 5.6e-118 428.7 424 53.8
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 2.8e-117 426.4 412 54.4
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.1e-116 424.5 416 54.3
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.8e-116 423.7 433 52.2
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 5.2e-116 422.2 417 54.9
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.5e-115 420.6 421 53.0
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.3e-114 417.5 416 53.6
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.3e-114 417.5 412 53.6
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 6.4e-114 415.2 408 54.2
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.1e-113 414.5 420 54.3
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.4e-113 414.1 450 51.1
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.4e-113 413.3 416 53.4
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 5.4e-113 412.1 436 50.7
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 9.2e-113 411.4 413 55.4
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 6.6e-111 405.2 349 59.6
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.9e-110 403.7 473 47.4
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 5.6e-110 402.1 356 60.1
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-109 401.0 411 52.3
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.5e-107 394.0 355 57.5
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.6e-107 393.3 406 53.2
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 4.4e-107 392.5 384 54.7
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.3e-106 391.0 385 53.8
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.9e-105 387.1 372 55.1
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 2.1e-101 373.6 347 55.3
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.8e-100 370.5 369 55.6
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.5e-99 367.5 347 54.2
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.4e-99 366.3 402 50.0
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.3e-98 364.4 402 51.7
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.6e-96 357.5 429 48.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.3e-95 353.6 353 55.8
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 5.3e-92 342.4 371 51.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.2e-91 341.3 323 56.0
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.4e-89 334.3 385 50.4
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.7e-88 330.1 326 53.4
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 2.5e-86 323.6 410 46.3
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 5.6e-86 322.4 391 47.3
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 2.2e-82 310.5 407 43.0
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.9e-82 310.1 306 54.9
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 1.1e-78 298.1 266 58.3
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 9.6e-78 295.0 215 66.0
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 4.8e-77 292.7 270 56.3
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 6.2e-77 292.4 523 35.6
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.5e-70 270.4 342 46.8
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 4.8e-69 266.2 518 35.3
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.0e-66 258.5 278 52.5
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.4e-65 254.6 436 37.8
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 9.7e-62 241.9 353 43.1
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.7e-61 241.1 308 45.5
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 8.2e-61 238.8 219 57.1
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-60 238.4 180 62.2
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.1e-60 236.9 183 61.2
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.6e-59 233.8 270 48.1
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 5.9e-59 232.6 403 38.5
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 6.5e-58 229.2 218 53.2
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 2.7e-56 223.8 241 51.5
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.1e-52 211.8 415 37.3
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 3.3e-46 190.3 157 61.8
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 4.4e-46 189.9 203 51.7
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.0e-42 178.7 291 41.2
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 2.2e-42 177.6 155 58.7
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.1e-41 175.3 270 41.5
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 2.5e-41 174.1 440 31.8
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 9.4e-41 172.2 193 48.7
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 3.0e-31 140.6 124 54.8
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-30 138.3 111 57.7
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.5e-30 138.3 111 56.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.4e-30 137.1 817 22.6
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 9.8e-30 135.6 427 29.5
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 8.3e-29 132.5 407 27.3
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.8e-28 131.3 90 68.9
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 5.4e-28 129.8 86 75.6
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.6e-27 128.3 143 50.3
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.1e-25 122.1 87 67.8
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.9e-25 121.3 82 72.0
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.0e-23 113.6 132 50.8
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 8.9e-23 112.5 135 48.1
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.0e-15 89.0 96 53.1
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 3.0e-15 87.4 287 28.2
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.7e-13 81.6 357 26.3
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 6.4e-13 79.7 269 26.0
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 9.8e-06 55.8 61 44.3


User provided reference genes

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