Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 2.2e-81 305.8 182 100.0
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-24 117.5 129 58.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 7.1e-24 114.8 136 57.4
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 6.0e-23 111.7 160 50.0
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 6.6e-22 108.2 160 50.6
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.3e-20 104.0 160 49.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.6e-20 103.6 161 44.7
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.1e-20 103.2 160 48.1
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 3.6e-20 102.4 159 46.5
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 6.2e-20 101.7 121 52.1
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 8.1e-20 101.3 127 50.4
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.4e-19 100.5 161 44.1
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 1.8e-19 100.1 155 47.1
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.0e-19 99.0 160 46.2
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 4.0e-19 99.0 161 44.1
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 5.3e-19 98.6 124 49.2
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 5.3e-19 98.6 161 44.7
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.5e-18 97.1 159 45.9
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.0e-18 96.7 160 45.6
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.0e-18 96.7 116 56.9
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 3.4e-18 95.9 109 55.0
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 4.5e-18 95.5 159 46.5
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 4.5e-18 95.5 112 55.4
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 5.8e-18 95.1 130 47.7
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 5.8e-18 95.1 110 54.5
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.3e-17 94.0 159 44.7
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.7e-17 93.6 159 41.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.2e-17 93.2 139 46.0
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 2.2e-17 93.2 140 44.3
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 6.4e-17 91.7 159 44.7
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 8.4e-17 91.3 159 44.7
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 8.4e-17 91.3 159 44.7
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 8.4e-17 91.3 163 43.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.1e-16 90.9 160 43.1
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.1e-16 90.9 160 43.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.9e-16 90.1 144 45.8
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 2.4e-16 89.7 111 49.5
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.2e-16 89.4 125 49.6
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 4.2e-16 89.0 100 55.0
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.2e-16 89.0 142 43.0
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 4.2e-16 89.0 155 44.5
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 4.2e-16 89.0 153 41.2
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 4.2e-16 89.0 160 41.2
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 5.4e-16 88.6 114 48.2
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 5.4e-16 88.6 139 46.0
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 7.1e-16 88.2 100 55.0
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 9.3e-16 87.8 154 46.1
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.2e-15 87.4 159 41.5
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.6e-15 87.0 160 45.0
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.6e-15 87.0 109 49.5
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.6e-15 87.0 109 49.5
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.7e-15 86.3 125 45.6
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.7e-15 86.3 111 47.7
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 3.5e-15 85.9 164 44.5
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 4.6e-15 85.5 113 46.0
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.0e-15 85.1 161 42.9
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-14 84.3 161 42.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.3e-14 84.0 107 48.6
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.3e-14 84.0 107 47.7
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.3e-14 84.0 161 42.2
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.8e-14 83.6 163 41.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 1.8e-14 83.6 165 42.4
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.8e-14 83.6 158 41.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 3.0e-14 82.8 158 43.7
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.9e-14 82.4 108 49.1
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 5.1e-14 82.0 166 41.0
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 5.1e-14 82.0 108 48.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 5.1e-14 82.0 132 44.7
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 5.1e-14 82.0 162 40.1
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 6.7e-14 81.6 96 49.0
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 8.7e-14 81.3 154 40.9
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.1e-13 80.9 109 47.7
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.5e-13 80.5 108 46.3
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.9e-13 80.1 108 48.1
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 1.9e-13 80.1 107 52.3
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.9e-13 80.1 107 52.3
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.9e-13 80.1 107 52.3
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.9e-13 80.1 107 52.3
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.5e-13 79.7 107 52.3
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 4.3e-13 79.0 109 45.9
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.3e-12 77.4 117 47.0
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 4.8e-12 75.5 135 45.9
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 6.2e-12 75.1 160 40.0
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.1e-11 72.8 96 46.9
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.6e-10 69.7 102 46.1
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 7.6e-10 68.2 108 43.5
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.2e-09 66.6 100 49.0
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.8e-09 65.9 114 40.4
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.4e-09 65.1 160 38.8
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 3.2e-08 62.8 73 53.4
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.2e-07 60.8 102 41.2
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.7e-07 59.7 130 39.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.6e-07 58.9 116 37.9
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 7.9e-07 58.2 130 38.5


User provided reference genes

Program Settings