Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 0.0e+00 1224.9 615 100.0
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 0.0e+00 1198.7 614 96.9
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 0.0e+00 1076.6 602 87.9
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.1e-310 1069.3 618 86.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 9.3e-310 1066.2 615 86.3
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.7e-308 1059.7 624 85.6
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.3e-307 1057.7 619 84.7
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.3e-307 1057.4 616 84.7
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.6e-306 1055.4 621 84.4
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.1e-306 1055.0 619 85.0
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.8e-306 1054.7 616 84.6
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.3e-305 1050.4 623 84.8
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.9e-305 1050.0 620 83.9
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 6.9e-305 1050.0 619 84.3
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 9.9e-304 1046.2 616 84.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.8e-303 1044.3 627 83.1
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.1e-302 1042.7 626 84.2
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.4e-302 1042.3 620 83.5
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.4e-302 1042.3 617 84.1
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.4e-302 1041.6 634 83.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 6.0e-301 1036.9 557 90.1
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.6e-298 1028.9 632 82.0
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.6e-298 1028.9 558 88.4
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.8e-297 1025.4 620 82.4
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.0e-297 1024.2 618 81.4
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 9.0e-297 1023.1 628 83.1
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.5e-296 1022.3 615 81.8
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 574 86.1
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 625 80.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 3.4e-296 1021.1 617 81.8
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 618 82.2
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 588 84.0
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 615 81.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 617 82.2
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.1e-294 1016.1 625 80.3
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 623 79.8
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 4.2e-294 1014.2 627 80.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 5.5e-294 1013.8 625 80.0
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 5.5e-294 1013.8 615 81.8
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 5.5e-294 1013.8 610 84.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 615 81.1
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 621 80.7
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 617 81.0
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.3e-292 1009.2 624 79.8
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 615 80.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 6.7e-292 1006.9 621 80.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 6.7e-292 1006.9 615 81.1
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 615 80.5
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 631 79.4
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 615 80.3
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 617 80.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 611 81.8
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 563 85.3
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 615 80.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 615 80.0
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 4.8e-290 1000.7 615 80.2
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.8e-290 1000.7 615 80.3
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 615 80.3
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 615 79.7
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.1e-289 999.6 613 80.3
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.1e-289 999.6 648 78.2
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 3.1e-289 998.0 615 79.0
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.1e-289 998.0 618 80.1
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 6.9e-289 996.9 558 86.4
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.2e-288 996.1 567 85.4
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-288 995.7 616 80.0
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 5.8e-288 993.8 653 77.0
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 7.6e-288 993.4 567 85.2
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.3e-287 992.6 613 79.3
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.3e-287 992.6 558 84.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.2e-287 991.9 615 80.0
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.2e-287 991.9 615 79.0
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.2e-287 991.9 615 79.0
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.8e-287 991.1 631 80.0
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.9e-287 990.7 615 79.5
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 6.5e-287 990.3 615 79.5
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-286 989.6 634 77.6
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.4e-286 989.2 558 85.3
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 3.2e-286 988.0 618 79.0
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 617 79.9
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.1e-286 986.9 615 79.8
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 7.1e-286 986.9 617 79.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.6e-285 985.7 620 79.2
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.1e-285 985.3 617 79.6
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.7e-285 984.9 615 79.0
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 2.7e-285 984.9 615 78.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 4.6e-285 984.2 616 78.2
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 6.0e-285 983.8 558 85.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 6.0e-285 983.8 618 79.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 6.0e-285 983.8 615 78.0
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.3e-284 982.6 615 78.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.8e-284 982.2 626 77.8
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 3.9e-284 981.1 619 78.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-284 981.1 615 79.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 3.9e-284 981.1 615 79.2
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 5.1e-284 980.7 615 79.2
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 6.7e-284 980.3 615 79.2
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 8.7e-284 979.9 617 78.8
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.1e-283 979.5 615 79.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.1e-283 979.5 615 79.3
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.5e-283 978.4 558 84.9
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.5e-283 978.4 692 73.3
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 3.3e-283 978.0 617 78.9
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 5.7e-283 977.2 615 79.0
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 7.4e-283 976.9 527 89.4
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 8.2e-282 973.4 615 78.9
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.2e-280 969.5 629 77.3
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 7.6e-280 966.8 564 83.2
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.6e-277 958.0 547 82.6
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.8e-276 955.7 620 78.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 4.3e-275 951.0 596 78.0
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.4e-273 945.3 595 76.5
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.3e-273 944.1 618 76.4
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 6.9e-273 943.7 560 79.5
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.7e-269 931.8 539 85.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.1e-267 926.4 634 75.9
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.0e-267 925.6 557 78.3
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.3e-266 920.6 563 80.8
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 3.3e-259 898.3 632 73.7
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 9.7e-259 896.7 559 76.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.7e-258 894.8 527 82.2
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.7e-245 852.0 625 69.4
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.2e-243 846.7 619 70.8
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 4.2e-238 828.2 564 69.7
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.7e-234 816.2 559 69.2
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.7e-234 815.1 490 84.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.9e-230 802.7 490 79.4
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.7e-223 779.6 433 87.5
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 7.3e-222 774.2 463 79.7
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.3e-220 769.2 484 78.9
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.2e-218 762.7 552 66.8
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.6e-216 755.0 490 78.2
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-215 753.8 426 85.4
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.2e-211 740.3 433 82.0
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.0e-207 725.7 422 83.4
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.2e-203 713.8 561 62.2
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.6e-197 692.2 403 85.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 5.1e-175 618.6 433 73.0
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.5e-168 595.9 576 53.1
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.1e-161 574.3 312 89.7
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.8e-148 530.4 384 71.6
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.5e-131 473.0 340 72.9
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 6.6e-122 442.2 290 76.2
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.1e-103 381.7 277 67.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.1e-92 345.1 216 76.9
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.6e-80 304.7 210 76.7
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.4e-76 291.6 189 77.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 1.3e-74 285.0 551 33.6
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.4e-68 264.2 150 82.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 8.4e-61 239.2 131 85.5
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.1e-59 234.6 133 81.2
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 3.3e-57 227.3 178 68.5
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 3.1e-55 220.7 126 81.7
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 9.3e-52 209.1 116 89.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 6.0e-51 206.5 114 83.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 6.0e-51 206.5 115 86.1
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.3e-49 200.7 144 71.5
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.3e-45 188.7 105 80.0
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.3e-45 188.7 252 49.2
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.9e-45 187.6 125 71.2
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.0e-45 186.8 115 75.7
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 5.1e-42 176.8 90 91.1
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.6e-38 164.5 223 46.2
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.0e-34 152.5 123 65.9
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 3.6e-27 127.5 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 6.1e-27 126.7 61 98.4
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 2.6e-25 121.3 70 80.0
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.0e-21 109.4 212 36.3
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 3.2e-20 104.4 56 89.3
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.8e-16 91.3 67 67.2
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 6.3e-16 90.1 180 29.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 5.9e-14 83.6 67 58.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 2.3e-10 71.6 93 48.4


User provided reference genes

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