Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.7e-70 268.1 134 100.0
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 4.0e-64 248.1 134 90.3
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.0e-64 248.1 134 90.3
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.0e-64 248.1 134 90.3
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 4.0e-64 248.1 134 90.3
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.8e-64 246.9 134 89.6
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.8e-64 246.9 132 93.9
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 8.8e-64 246.9 132 93.9
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 8.8e-64 246.9 132 93.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-63 246.1 132 90.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 2.0e-63 245.7 133 91.0
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.6e-63 245.4 131 92.4
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.6e-63 245.4 131 92.4
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 3.3e-63 245.0 134 88.8
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 3.3e-63 245.0 131 91.6
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 4.4e-63 244.6 133 90.2
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.4e-63 244.6 134 89.6
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 4.4e-63 244.6 132 93.2
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 7.4e-63 243.8 129 93.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 7.4e-63 243.8 130 91.5
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 7.4e-63 243.8 131 90.8
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 7.4e-63 243.8 131 90.8
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 7.4e-63 243.8 129 92.2
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 7.4e-63 243.8 129 93.0
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 9.7e-63 243.4 132 91.7
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 90.1
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 90.1
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.3e-62 243.0 129 91.5
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.7e-62 242.7 131 89.3
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 2.2e-62 242.3 132 90.9
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.2e-62 242.3 132 92.4
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.8e-62 241.9 131 89.3
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 6.3e-62 240.7 131 90.1
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 8.2e-62 240.4 131 90.1
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-61 240.0 131 88.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 88.7
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 88.7
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.4e-61 239.6 132 90.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 88.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.8e-61 239.2 127 93.7
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 2.4e-61 238.8 133 88.7
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.4e-61 238.8 129 91.5
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 2.4e-61 238.8 131 90.1
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 3.1e-61 238.4 128 91.4
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.1e-61 238.0 132 89.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 4.1e-61 238.0 133 90.2
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 87.8
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 5.3e-61 237.7 131 89.3
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 7.0e-61 237.3 129 90.7
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.1e-61 236.9 133 88.7
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 9.1e-61 236.9 133 88.7
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.2e-60 236.5 133 88.7
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 2.0e-60 235.7 134 86.6
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.5e-60 234.6 133 87.2
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 7.7e-60 233.8 129 88.4
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.2e-59 232.3 157 75.8
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.9e-59 231.9 131 89.3
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 3.8e-59 231.5 129 87.6
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 3.8e-59 231.5 133 88.0
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 6.5e-59 230.7 132 87.9
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.5e-58 229.6 132 86.4
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.5e-58 228.8 132 85.6
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.2e-58 228.4 132 85.6
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 3.2e-58 228.4 126 89.7
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 3.2e-58 228.4 129 86.8
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 5.5e-58 227.6 136 83.1
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 7.2e-58 227.3 133 85.7
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 7.2e-58 227.3 133 85.7
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 7.2e-58 227.3 133 85.7
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 7.2e-58 227.3 133 85.7
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 9.4e-58 226.9 128 85.2
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.6e-57 226.1 133 85.7
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.6e-57 226.1 133 85.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.6e-57 226.1 134 83.6
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.6e-57 226.1 126 87.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 3.6e-57 224.9 133 84.2
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 4.7e-57 224.6 133 85.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 131 82.4
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.5e-55 219.5 129 84.5
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 2.0e-55 219.2 131 82.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.0e-55 219.2 131 82.4
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.0e-55 219.2 129 83.7
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.0e-55 219.2 131 83.2
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 3.4e-55 218.4 131 81.7
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 3.4e-55 218.4 133 82.7
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 3.4e-55 218.4 133 82.7
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 4.4e-55 218.0 131 82.4
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 5.7e-55 217.6 133 82.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 5.7e-55 217.6 133 82.7
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 5.7e-55 217.6 129 84.5
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.8e-55 216.9 129 82.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.3e-54 216.5 128 82.0
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.7e-54 216.1 185 65.4
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 2.2e-54 215.7 125 84.0
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.1e-53 213.4 129 82.9
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.4e-53 213.0 133 81.2
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 5.4e-53 211.1 133 79.7
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 7.7e-52 207.2 133 78.2
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.2e-51 205.7 165 67.9
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 6.5e-51 204.1 165 67.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.5e-50 201.1 129 76.7
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.1e-49 199.1 134 77.6
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.3e-48 195.7 129 73.6
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.2e-48 194.5 133 71.4
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.6e-47 192.2 131 77.9
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 5.7e-47 191.0 130 77.7
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.7e-46 189.5 195 55.4
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.7e-46 189.5 128 75.0
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.8e-45 186.0 123 70.7
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 3.1e-45 185.3 104 84.6
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.4e-45 184.5 133 64.7
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.6e-44 183.0 132 64.4
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 3.5e-44 181.8 127 77.2
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.9e-44 181.0 132 67.4
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 2.8e-41 172.2 125 66.4
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.3e-40 169.1 130 61.5
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.3e-38 163.3 137 67.9
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.0e-35 153.7 86 91.9
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 2.3e-35 152.5 87 89.7
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.9e-35 152.1 79 88.6
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.0e-35 151.4 92 80.4
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.5e-34 149.8 87 88.5
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-34 149.4 85 81.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 9.5e-34 147.1 88 85.2
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.2e-33 146.7 87 86.2
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.7e-33 144.8 85 80.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.2e-31 140.2 71 93.0
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.5e-31 139.8 138 59.4
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.9e-30 134.8 87 77.0
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.9e-30 134.8 85 78.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.3e-30 134.0 75 82.7
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 3.2e-29 132.1 86 77.9
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 7.0e-29 131.0 86 76.7
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 7.0e-29 131.0 86 76.7
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.6e-28 128.3 89 75.3
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.0e-28 127.9 68 85.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 3.9e-27 125.2 100 70.0
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 4.3e-26 121.7 80 80.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.3e-22 110.2 64 78.1
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.0e-19 99.0 87 60.9
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.3e-18 95.1 88 56.8
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-17 92.4 46 89.1
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.2e-16 88.2 45 84.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-15 87.0 88 54.5
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.9e-13 79.7 56 76.8
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.8e-08 63.2 42 73.8
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 8.9e-08 60.8 41 65.9
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 7.6e-07 57.8 54 59.3


User provided reference genes

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