Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 9.3e-187 657.9 753 100.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.7e-92 344.7 213 83.1
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 3.9e-92 343.6 215 82.8
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.9e-92 343.6 206 86.4
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 8.6e-92 342.4 212 82.5
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.5e-91 341.7 208 85.1
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 2.5e-91 340.9 215 82.3
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.3e-91 340.5 214 81.8
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 5.6e-91 339.7 213 81.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-90 338.6 212 82.5
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-90 338.6 212 82.5
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.2e-90 338.6 215 81.4
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.6e-90 338.2 214 82.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.1e-90 337.8 214 84.1
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 2.8e-90 337.4 212 83.0
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 2.8e-90 337.4 209 82.3
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.8e-90 337.4 211 83.4
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 6.2e-90 336.3 215 81.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 8.1e-90 335.9 206 85.4
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 8.1e-90 335.9 208 83.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.1e-89 335.5 213 82.2
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.1e-89 335.5 213 82.2
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.4e-89 335.1 212 82.1
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 1.4e-89 335.1 213 81.2
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.8e-89 334.7 213 81.2
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.8e-89 334.7 215 80.9
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.8e-89 334.7 211 81.5
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.4e-89 334.3 216 82.4
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 3.1e-89 334.0 216 81.0
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 3.1e-89 334.0 215 80.9
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 4.0e-89 333.6 215 80.9
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 4.0e-89 333.6 208 82.7
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 5.2e-89 333.2 213 81.7
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 5.2e-89 333.2 215 80.0
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 5.2e-89 333.2 207 83.6
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.9e-89 332.8 209 81.8
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 8.9e-89 332.4 208 83.7
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.5e-88 331.6 211 81.5
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.5e-88 331.6 211 81.5
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 2.0e-88 331.3 209 81.8
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.0e-88 331.3 215 82.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.6e-88 330.9 216 80.6
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.6e-88 330.9 216 80.6
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.4e-88 330.1 209 83.7
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 4.4e-88 330.1 208 83.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 5.8e-88 329.7 209 82.3
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 7.6e-88 329.3 209 81.8
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 7.6e-88 329.3 214 80.4
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 7.6e-88 329.3 213 80.8
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 9.9e-88 328.9 214 79.9
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.7e-87 328.2 219 79.9
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.7e-87 328.2 213 80.3
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.7e-87 328.2 209 81.8
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.2e-87 327.8 212 80.7
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.9e-87 327.4 209 82.8
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.9e-87 327.4 209 78.9
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.9e-87 327.4 209 78.9
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.8e-87 327.0 209 78.9
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.8e-87 327.0 209 78.9
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.8e-87 327.0 213 79.8
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.4e-87 326.2 209 78.9
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.4e-87 325.9 204 85.3
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.4e-87 325.9 204 85.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 8.4e-87 325.9 215 79.5
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 8.4e-87 325.9 216 79.2
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.4e-86 325.1 213 79.3
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.9e-86 324.7 214 79.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.9e-86 324.7 216 78.7
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.9e-86 324.7 213 77.9
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.9e-86 324.7 211 80.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 3.2e-86 323.9 212 80.7
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.4e-86 323.2 209 78.0
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 5.4e-86 323.2 204 82.8
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.7e-85 320.9 215 80.5
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 3.5e-85 320.5 215 77.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.5e-85 320.5 195 85.1
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 7.8e-85 319.3 213 78.9
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.0e-84 318.9 223 76.7
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.7e-84 318.2 207 78.3
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 3.0e-84 317.4 207 77.8
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 5.1e-84 316.6 215 76.7
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.5e-83 315.1 202 80.7
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.9e-83 314.7 210 78.6
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 3.3e-83 313.9 211 78.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.5e-80 305.1 252 67.5
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.5e-80 305.1 216 75.5
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 9.9e-80 302.4 196 80.6
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.7e-79 301.6 209 74.6
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.0e-77 293.1 209 72.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.8e-76 291.6 206 73.3
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 9.6e-75 285.8 186 80.1
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 4.8e-74 283.5 184 81.0
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-73 282.3 178 82.6
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 3.4e-72 277.3 209 67.5
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.7e-71 275.0 178 80.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 3.8e-71 273.9 178 79.8
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.0e-68 265.8 200 67.0
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.7e-68 263.1 189 70.9
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.5e-67 261.2 207 65.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.3e-67 260.4 198 71.7
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 4.8e-66 256.9 225 64.4
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 4.5e-64 250.4 195 65.1
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.5e-62 244.6 188 71.8
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 6.7e-60 236.5 157 80.9
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.5e-59 235.3 223 61.4
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.5e-59 235.3 179 72.6
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.8e-52 211.8 193 60.6
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.2e-42 178.3 156 59.6
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.9e-31 141.4 94 74.5
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 8.5e-31 139.8 115 59.1
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 9.7e-27 126.3 195 40.0
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.1e-25 122.9 103 68.9
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 4.1e-25 120.9 77 77.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 2.0e-24 118.6 210 38.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-22 112.8 75 77.3
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 7.2e-22 110.2 82 73.2
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 3.6e-21 107.8 118 53.4
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.3e-18 99.4 64 78.1
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.8e-17 95.5 63 69.8
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.1e-17 94.7 57 80.7
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.4e-17 94.0 107 49.5
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.6e-16 92.4 63 76.2
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.9e-15 88.2 55 74.5
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.9e-14 85.5 168 35.7
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 4.2e-14 84.3 69 65.2
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.1e-13 82.0 141 34.0
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.1e-13 82.0 141 34.0
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 4.4e-11 74.3 52 71.2
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 4.9e-10 70.9 53 67.9
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 9.2e-09 66.6 39 82.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.6e-08 65.9 36 88.9
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 3.3e-06 58.2 147 26.5
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 7.3e-06 57.0 35 80.0


User provided reference genes

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