Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.5e-164 582.8 302 100.0
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.4e-130 469.9 304 79.6
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 5.5e-130 468.0 304 79.3
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.3e-127 458.8 304 77.3
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 3.1e-125 452.2 303 76.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 9.0e-125 450.7 303 77.2
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.2e-124 450.3 297 77.8
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 7.7e-124 447.6 302 77.2
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 2.9e-123 445.7 303 76.2
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 6.5e-123 444.5 303 75.6
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.4e-122 443.4 303 74.9
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 9.4e-122 440.7 296 77.4
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.7e-121 439.1 300 77.0
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 6.1e-121 438.0 299 76.3
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 3.9e-120 435.3 295 76.9
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 3.9e-120 435.3 306 74.5
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 6.7e-120 434.5 299 75.6
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.1e-119 433.7 298 76.2
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.5e-119 433.3 297 74.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 2.5e-119 432.6 305 75.1
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 4.3e-119 431.8 308 74.0
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.3e-118 430.3 299 74.9
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.7e-118 429.9 307 75.6
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 3.7e-118 428.7 300 76.3
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.7e-118 428.7 300 75.0
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 6.3e-118 427.9 297 74.4
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 1.4e-117 426.8 301 72.8
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 4.1e-117 425.2 300 76.3
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 4.1e-117 425.2 300 75.7
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 5.3e-117 424.9 297 73.7
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 5.3e-117 424.9 352 66.8
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 6.9e-117 424.5 307 73.3
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 6.9e-117 424.5 294 73.5
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 1.2e-116 423.7 300 75.3
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.0e-116 422.9 300 73.7
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.0e-116 422.9 300 75.3
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 2.6e-116 422.5 300 71.3
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 5.9e-116 421.4 297 73.7
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 7.7e-116 421.0 300 71.0
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 5.0e-115 418.3 314 70.7
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 5.0e-115 418.3 306 71.6
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 5.0e-115 418.3 301 71.8
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 6.5e-115 417.9 300 75.7
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 6.5e-115 417.9 298 73.8
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 8.5e-115 417.5 314 70.4
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.5e-115 417.5 301 71.8
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.1e-114 417.2 282 78.7
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 4.2e-114 415.2 299 71.9
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 9.4e-114 414.1 300 75.0
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 3.6e-113 412.1 295 71.2
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 3.6e-113 412.1 300 75.3
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 4.7e-113 411.8 297 72.4
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.4e-112 410.2 282 76.2
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 2.3e-112 409.5 306 70.6
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 5.1e-112 408.3 294 72.1
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.1e-111 407.1 303 72.9
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.5e-111 406.8 308 70.5
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.5e-111 406.8 335 68.7
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.3e-110 403.7 315 69.5
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 2.2e-110 402.9 302 71.9
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.8e-110 402.5 306 69.3
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.8e-109 399.8 361 60.9
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.1e-109 399.1 297 73.7
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 4.1e-109 398.7 310 68.7
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.5e-108 396.7 317 67.2
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 2.0e-108 396.4 271 75.6
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.0e-107 394.0 342 63.5
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.1e-106 390.6 305 67.5
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 7.2e-106 387.9 293 70.0
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 7.2e-106 387.9 279 73.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-105 386.7 293 72.4
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 4.7e-105 385.2 293 69.6
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 4.7e-105 385.2 293 69.6
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.7e-105 385.2 369 58.0
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 1.8e-104 383.3 300 68.0
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 5.2e-104 381.7 293 69.6
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 3.3e-103 379.0 309 66.7
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 7.0e-101 371.3 319 63.9
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 9.1e-101 370.9 286 70.6
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 9.1e-101 370.9 257 77.0
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 2.0e-100 369.8 338 62.7
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 3.5e-100 369.0 256 74.6
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.2e-99 366.3 329 61.4
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 9.4e-98 360.9 235 77.0
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.2e-97 360.5 253 75.1
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 4.7e-97 358.6 259 71.4
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 2.3e-96 356.3 250 74.8
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.3e-96 356.3 255 73.3
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 4.0e-96 355.5 298 66.4
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 6.8e-96 354.8 254 72.8
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 1.7e-94 350.1 301 65.1
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.3e-94 348.2 248 74.2
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.8e-93 346.7 309 63.8
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.2e-92 344.0 370 54.6
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 4.5e-92 342.0 317 59.0
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.9e-90 336.7 209 82.3
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 7.2e-90 334.7 210 80.0
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.7e-89 332.8 260 67.7
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 4.0e-88 328.9 294 61.9
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 6.8e-88 328.2 212 77.8
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.2e-87 327.4 292 63.4
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 8.3e-86 321.2 254 67.7
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.1e-85 320.9 259 66.0
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 7.0e-85 318.2 300 61.3
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 2.3e-83 313.2 246 70.7
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 8.6e-83 311.2 230 73.0
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.5e-82 310.5 184 83.2
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.3e-82 309.3 325 54.8
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.0e-80 304.3 257 68.1
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.5e-79 298.1 291 60.1
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 3.7e-78 295.8 267 61.8
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 3.2e-77 292.7 290 55.5
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.6e-76 290.4 244 66.4
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 4.6e-76 288.9 260 61.5
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.0e-71 273.5 165 81.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.8e-71 271.2 226 62.8
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.7e-70 270.4 290 53.4
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 8.3e-70 268.1 190 68.9
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 7.8e-68 261.5 207 68.1
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.5e-66 257.3 342 48.0
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.5e-66 257.3 272 54.8
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 6.8e-64 248.4 155 81.9
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 6.2e-57 225.3 156 73.1
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.1e-52 210.3 130 83.1
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 5.8e-31 139.0 118 61.9
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 1.0e-27 128.3 339 32.4
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.8e-27 127.5 300 31.3
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 5.7e-18 95.9 329 29.5
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.3e-17 94.7 78 65.4
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 5.5e-13 79.3 78 55.1
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 5.1e-11 72.8 60 58.3
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.5e-10 70.5 52 69.2
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 1.8e-08 64.3 51 64.7
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 1.5e-07 61.2 71 52.1
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 2.2e-06 57.4 181 32.6


User provided reference genes

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