Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.4e-94 349.0 193 100.0
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.8e-79 298.9 192 83.3
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.8e-78 296.2 192 84.4
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 3.1e-78 295.4 192 82.3
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 3.8e-76 288.5 192 80.2
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.0e-76 288.1 193 79.8
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.4e-75 286.6 192 80.7
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.4e-75 286.6 191 78.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.2e-75 285.4 191 79.6
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 5.5e-75 284.6 192 79.7
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 9.4e-75 283.9 192 79.7
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.2e-74 283.5 191 80.1
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.2e-74 283.5 195 79.5
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.6e-74 283.1 195 77.4
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.1e-74 282.7 192 78.6
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.7e-74 282.3 192 78.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 2.7e-74 282.3 192 79.2
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.9e-74 280.8 192 76.6
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 7.9e-74 280.8 193 78.8
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.3e-73 279.3 192 77.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.0e-73 278.9 192 77.1
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 5.1e-73 278.1 193 81.9
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 6.7e-73 277.7 192 78.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.8e-73 277.3 192 77.6
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 8.8e-73 277.3 192 79.2
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 8.8e-73 277.3 193 79.8
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 8.8e-73 277.3 191 78.5
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.1e-72 276.9 192 77.6
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.5e-72 276.6 193 77.7
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.3e-72 275.4 192 79.2
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 4.3e-72 275.0 192 77.6
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.7e-72 274.6 192 78.1
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.7e-72 274.6 192 78.6
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 4.8e-71 271.6 194 77.3
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.3e-71 271.2 193 76.2
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 8.2e-71 270.8 191 73.8
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 8.2e-71 270.8 192 75.5
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 8.2e-71 270.8 192 75.0
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.1e-70 270.4 193 76.2
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.4e-70 270.0 193 77.2
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.4e-70 269.2 192 77.1
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 6.9e-70 267.7 192 78.1
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 9.1e-70 267.3 192 77.6
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.2e-69 266.9 193 75.6
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.0e-69 266.2 193 75.6
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 2.0e-69 266.2 193 76.7
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.6e-69 265.8 192 77.1
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.4e-69 265.4 191 74.3
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 5.9e-69 264.6 191 77.0
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 5.9e-69 264.6 191 73.3
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.0e-68 263.8 190 73.2
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.0e-68 263.8 207 71.0
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.3e-68 263.5 191 72.8
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.7e-68 263.1 191 73.3
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 2.2e-68 262.7 192 73.4
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 3.8e-68 261.9 192 75.5
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 6.5e-68 261.2 191 71.2
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 6.5e-68 261.2 191 72.8
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 6.5e-68 261.2 233 63.9
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 8.5e-68 260.8 192 71.9
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.5e-67 259.2 192 74.5
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.2e-67 258.8 192 75.5
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 4.2e-67 258.5 191 74.3
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 5.5e-67 258.1 192 72.9
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 5.5e-67 258.1 191 73.8
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 7.2e-67 257.7 195 72.8
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.2e-67 257.7 192 74.5
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 9.4e-67 257.3 191 70.2
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 9.4e-67 257.3 191 73.8
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.2e-66 256.9 191 70.7
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.2e-66 256.9 194 71.6
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.6e-66 256.5 193 71.5
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.6e-66 256.5 191 73.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.6e-66 256.5 191 70.2
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 2.1e-66 256.1 192 72.4
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 4.7e-66 255.0 207 70.0
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.4e-65 253.4 199 70.4
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.8e-65 253.1 194 70.1
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 6.7e-65 251.1 193 73.6
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 6.7e-65 251.1 192 69.8
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.1e-64 250.4 192 72.4
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.1e-64 250.4 192 72.4
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 5.7e-64 248.1 192 72.9
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 9.7e-64 247.3 191 68.6
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 8.2e-63 244.2 192 70.3
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.2e-61 240.4 192 69.8
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.2e-61 240.4 207 65.2
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.5e-61 240.0 154 80.5
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.5e-61 240.0 192 64.1
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 2.0e-61 239.6 192 70.8
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.5e-59 232.6 191 70.2
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.6e-58 229.9 193 68.4
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.6e-58 229.9 191 63.9
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.7e-58 229.2 191 64.9
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 8.0e-58 227.6 191 66.5
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-57 227.3 192 66.7
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-57 227.3 192 66.7
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.3e-57 226.1 191 66.0
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-57 226.1 191 66.0
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-57 226.1 191 62.8
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-57 226.1 191 66.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 6.7e-57 224.6 194 67.5
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 8.8e-57 224.2 193 65.8
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-56 223.8 191 65.4
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.4e-56 221.9 191 64.4
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 5.7e-56 221.5 193 66.8
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 9.7e-56 220.7 191 63.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.7e-55 219.9 192 64.6
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-55 219.5 191 64.9
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.2e-55 219.5 191 64.9
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.7e-55 218.8 193 63.7
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.8e-55 218.4 191 63.9
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 4.8e-55 218.4 191 65.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.3e-55 218.0 191 63.9
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 8.2e-55 217.6 191 64.4
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 8.2e-55 217.6 193 64.2
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.4e-54 216.1 191 62.8
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 3.1e-54 215.7 191 63.9
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 9.1e-54 214.2 194 64.9
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 3.5e-53 212.2 191 62.8
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 3.5e-53 212.2 192 66.7
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.0e-52 210.7 191 63.9
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.0e-52 210.7 229 56.3
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.9e-52 209.1 192 62.0
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.9e-52 209.1 192 62.0
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.8e-52 208.8 191 59.2
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 5.0e-52 208.4 191 59.7
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.1e-51 207.2 191 60.7
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 2.5e-51 206.1 192 64.1
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 4.2e-51 205.3 192 58.3
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 3.6e-50 202.2 191 57.6
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 3.6e-50 202.2 194 60.8
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.0e-50 201.1 192 57.8
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 1.4e-49 200.3 191 61.3
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.3e-49 199.5 192 61.5
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 3.0e-49 199.1 194 58.8
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 8.8e-49 197.6 191 56.5
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.5e-48 196.8 192 56.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-48 196.4 191 56.0
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 3.4e-48 195.7 191 61.3
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-48 195.7 191 56.0
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 5.7e-48 194.9 117 82.1
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.7e-47 192.2 118 78.8
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 6.3e-47 191.4 142 69.0
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.1e-46 190.7 217 53.0
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.1e-46 190.7 191 55.0
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.4e-46 189.5 191 57.1
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.3e-46 188.3 185 60.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 7.7e-45 184.5 191 57.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.0e-44 184.1 144 66.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-42 177.2 134 75.4
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.8e-41 173.3 127 77.2
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.2e-40 170.6 193 50.3
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-40 170.2 129 75.2
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 2.0e-40 169.9 191 50.8
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.8e-40 167.5 105 76.2
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-38 164.1 143 67.8
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 9.8e-16 87.8 64 60.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 5.4e-14 82.0 192 32.8
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-11 74.3 49 69.4
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 3.6e-10 69.3 47 70.2
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.3e-09 66.6 50 60.0
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 8.9e-09 64.7 106 43.4
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 8.9e-09 64.7 53 66.0
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 1.2e-08 64.3 171 33.9
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 4.4e-08 62.4 49 59.2
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.7e-07 60.5 49 55.1
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 6.4e-07 58.5 49 55.1
Thecc.02G021100 Theobroma cacao HOM05D003925 ORTHO05D004832 4.1e-06 55.8 44 70.5


User provided reference genes

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