Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 0.0e+00 1189.5 632 100.0
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 8.8e-239 830.5 655 73.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.0e-224 780.8 632 71.0
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 8.0e-224 780.8 651 67.4
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 8.3e-221 770.8 656 69.1
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.4e-220 769.2 660 66.8
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.1e-220 768.5 655 68.5
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.2e-218 762.7 660 65.8
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 5.0e-218 761.5 653 67.5
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.5e-218 761.1 647 68.3
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 8.5e-218 760.8 647 68.2
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 2.1e-216 756.1 659 64.8
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 6.8e-215 751.1 658 66.4
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 9.8e-214 747.3 659 64.3
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.7e-213 746.5 660 64.8
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.9e-213 745.0 657 67.3
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.9e-213 745.0 663 63.3
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 8.3e-213 744.2 660 65.0
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 8.3e-213 744.2 659 64.9
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.1e-212 743.8 660 65.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.3e-210 736.9 661 66.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.9e-210 735.7 661 65.1
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 3.8e-210 735.3 659 65.7
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.9e-209 733.0 661 63.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 3.3e-209 732.3 661 63.4
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 4.7e-208 728.4 660 63.8
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 8.0e-208 727.6 662 64.4
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 3.0e-207 725.7 649 65.9
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.2e-206 723.8 661 63.8
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 3.4e-206 722.2 661 61.1
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 7.5e-206 721.1 661 63.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 6.4e-205 718.0 650 64.8
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 8.3e-205 717.6 665 61.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.1e-204 717.2 665 62.3
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.1e-204 717.2 663 61.4
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.4e-204 716.8 656 63.0
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-204 716.8 659 63.9
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-204 716.8 659 63.9
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 7.0e-204 714.5 659 62.7
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 9.2e-204 714.1 663 60.9
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.0e-203 713.0 654 64.1
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.7e-203 712.6 663 64.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 4.6e-203 711.8 665 62.3
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 4.6e-203 711.8 660 62.0
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.3e-202 710.3 662 62.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 8.6e-202 707.6 661 62.3
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-201 706.8 661 61.9
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-201 706.8 661 62.0
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 7.3e-201 704.5 662 62.8
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-200 703.4 657 62.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 3.6e-200 702.2 652 60.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 8.0e-200 701.0 660 64.2
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-199 700.3 656 61.9
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.0e-199 698.7 661 61.3
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 5.2e-199 698.4 647 64.0
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.8e-199 698.0 660 63.8
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-198 697.2 662 62.2
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.4e-198 695.7 663 61.8
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 5.8e-198 694.9 651 62.5
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 5.8e-198 694.9 654 61.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.2e-197 693.0 657 60.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.2e-197 693.0 661 61.0
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 7.0e-196 688.0 653 63.7
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.9e-194 682.2 656 64.0
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.6e-192 676.8 654 59.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.8e-192 676.0 659 61.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.9e-191 671.0 659 59.9
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.5e-190 670.2 535 69.5
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.0e-190 669.8 649 60.7
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 7.5e-190 667.9 683 60.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.2e-189 666.4 661 59.6
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.9e-189 666.0 654 59.6
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.7e-189 665.6 654 58.0
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 4.1e-188 662.1 645 62.3
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.5e-185 653.7 654 57.2
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 7.3e-185 651.4 659 57.7
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.1e-184 649.8 654 57.2
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.1e-183 647.5 649 56.9
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.4e-183 647.1 562 66.2
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.1e-183 646.0 654 56.7
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 4.0e-183 645.6 648 60.0
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.2e-182 644.0 651 57.1
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.2e-182 644.0 658 57.9
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 9.9e-182 641.0 653 58.5
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.3e-181 640.6 652 58.6
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-180 637.1 650 57.2
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.4e-180 637.1 655 57.4
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 4.1e-180 635.6 658 56.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 4.1e-180 635.6 658 56.8
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.4e-180 635.2 666 56.8
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.7e-179 632.9 658 60.6
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 4.6e-179 632.1 657 60.6
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 7.8e-179 631.3 649 57.3
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.8e-179 631.3 669 58.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.3e-178 630.6 656 60.2
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.3e-177 625.9 648 57.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 5.6e-177 625.2 643 58.2
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 3.6e-176 622.5 652 57.7
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 9.0e-175 617.8 655 53.7
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.5e-174 617.1 655 56.2
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.5e-174 617.1 641 59.3
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.4e-174 615.5 609 59.8
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.4e-174 615.5 651 57.8
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 5.8e-174 615.1 656 54.3
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.9e-173 612.1 650 60.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.9e-173 612.1 653 57.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 6.4e-173 611.7 658 55.6
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-172 610.9 655 53.7
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-172 610.5 655 53.3
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-171 606.7 655 52.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.0e-170 604.4 548 62.2
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.0e-170 604.4 548 62.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.9e-170 602.4 663 54.1
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.1e-170 602.1 650 56.0
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 4.3e-169 599.0 655 54.8
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.6e-168 595.9 662 53.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 8.1e-168 594.7 661 53.3
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.0e-167 591.3 657 54.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 9.9e-166 587.8 640 57.0
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.7e-165 587.0 663 53.1
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.4e-165 585.1 664 53.6
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-164 584.3 646 51.9
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 3.0e-162 576.2 650 54.8
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.1e-162 575.5 652 54.9
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.9e-161 573.5 654 54.0
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.6e-161 571.2 653 53.1
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.0e-159 565.8 648 54.9
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 6.9e-159 565.1 652 52.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.7e-157 560.5 553 57.5
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.8e-157 559.3 640 54.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 6.0e-155 552.0 647 52.9
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 7.4e-153 545.0 671 50.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-152 543.1 658 50.8
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.8e-152 542.3 651 52.8
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.2e-148 529.3 653 50.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.8e-146 523.9 693 48.2
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 3.0e-146 523.1 662 50.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 6.7e-146 521.9 660 51.7
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.3e-144 517.7 650 49.4
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.5e-142 510.8 642 49.7
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.0e-142 510.4 616 51.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.9e-142 508.8 676 47.0
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.2e-139 501.1 671 49.2
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.6e-139 500.7 673 46.4
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 3.9e-138 496.1 530 56.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.4e-135 487.6 638 50.9
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 8.5e-133 478.4 660 45.9
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 3.9e-130 469.5 399 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.3e-121 439.9 654 45.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.1e-119 434.9 662 44.7
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.4e-119 434.5 603 46.4
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.7e-109 401.0 416 58.2
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.5e-108 397.9 399 58.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.2e-105 388.3 405 57.0
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 8.9e-98 362.1 653 42.0
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.8e-95 354.4 308 63.3
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 4.7e-91 339.7 575 45.4
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.3e-88 331.6 658 37.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.5e-81 308.1 537 41.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 9.8e-81 305.4 425 46.4
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.4e-79 301.6 545 39.8
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 4.1e-71 273.5 228 69.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.7e-56 224.9 619 30.5
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.1e-52 212.2 273 44.3
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.5e-31 140.2 113 58.4
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.3e-28 130.6 222 46.4
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 7.7e-25 119.8 77 76.6
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.2e-23 114.4 106 53.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 7.9e-22 109.8 140 43.6
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.0e-21 109.4 151 47.0
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.7e-21 106.7 61 77.0
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.3e-20 104.0 78 71.8
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.4e-18 99.0 73 69.9
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.4e-15 89.0 89 51.7
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.2e-15 87.8 123 48.8
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 5.7e-12 77.0 400 25.2
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 8.2e-11 73.2 60 61.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 3.1e-10 71.2 476 23.5
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.6e-06 58.9 107 44.9
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 8.0e-06 56.6 496 23.2


User provided reference genes

Program Settings