Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 5070.0 2572 100.0
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2616.3 2618 54.8
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2614.3 2610 54.9
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 2395.2 2595 50.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 2390.1 2572 51.1
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 2385.5 2582 50.9
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 2362.4 2576 50.6
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2337.8 2715 49.8
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2319.3 2595 50.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2303.9 2629 49.4
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2300.8 2650 49.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2272.3 2615 49.1
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2268.0 2609 48.9
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 2264.6 2755 47.9
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 2256.5 2605 49.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2234.5 2617 48.0
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2226.8 2588 49.0
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2213.7 2652 48.1
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2203.3 2602 50.1
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2154.8 2589 46.9
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2127.8 2607 46.8
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2120.9 2606 46.4
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2120.9 2684 46.6
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2089.7 2605 46.9
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2072.7 2657 45.7
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2070.0 2624 46.1
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2069.7 2597 45.6
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2036.2 2612 45.1
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2013.4 2600 44.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2000.3 2592 45.3
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1984.9 2611 44.4
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1982.6 2567 45.7
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1967.2 2569 44.7
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1961.8 2378 47.0
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1956.8 2617 43.8
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1936.0 2576 44.2
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1924.1 2550 45.3
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1922.5 2599 43.4
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1917.9 2604 43.1
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1902.1 2322 46.4
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1899.0 2603 43.6
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1898.6 2603 42.9
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1873.6 2544 44.6
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1865.1 2601 42.8
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1856.6 2615 42.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1856.3 2666 42.1
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1854.0 2276 46.3
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1850.9 2265 47.6
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1838.2 2621 41.6
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1830.8 2601 42.0
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1824.3 2614 42.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1821.6 2589 42.0
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1818.5 2597 41.7
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1811.6 2582 42.3
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1811.2 2666 42.1
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1808.1 2578 42.0
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1794.6 2677 41.2
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1779.2 2583 42.0
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1778.8 2644 41.0
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1773.1 2592 41.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1770.0 2579 41.6
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1766.5 2625 41.9
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1762.7 2662 40.6
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1760.7 2596 41.4
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1754.2 2575 41.4
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1742.6 2623 41.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1731.5 2594 41.2
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1721.1 2598 41.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1704.9 2557 41.4
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1695.2 2018 47.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1657.5 2636 40.1
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1614.0 2670 39.3
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1608.2 2034 46.2
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1580.5 2647 39.8
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1573.5 2641 39.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1566.2 2581 38.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1565.1 2680 39.3
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1562.7 2580 39.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1557.3 2446 40.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1550.8 2677 38.7
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1520.8 2549 38.6
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1516.9 1778 47.6
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1477.6 2134 42.0
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1460.7 2598 38.1
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1451.0 2652 37.1
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1415.6 1711 47.2
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1406.7 2602 37.6
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1394.4 2367 37.4
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1370.5 2591 36.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1327.8 2589 35.8
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1275.4 2229 37.6
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1242.6 2015 37.6
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1210.3 1797 42.3
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1179.1 1744 40.5
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1169.1 2119 36.7
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1139.4 2206 35.9
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1104.7 2491 33.5
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.9e-272 943.7 909 56.3
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.4e-258 897.5 787 61.5
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 4.5e-217 760.4 2734 26.8
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.7e-203 715.3 811 48.5
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 8.3e-203 713.0 2791 26.4
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 5.0e-200 703.7 2566 26.2
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.2e-190 670.2 605 59.3
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 4.4e-180 637.5 2800 25.2
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.9e-176 624.4 1140 36.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.8e-168 599.0 2579 24.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.0e-168 598.2 621 53.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.9e-165 587.0 1244 33.9
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 6.0e-161 573.9 630 52.5
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-160 572.4 1129 34.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.3e-151 541.6 1141 35.5
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 7.2e-146 523.9 729 43.1
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.7e-145 521.9 779 43.9
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-136 493.0 900 37.2
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 5.1e-136 491.1 554 49.1
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 5.5e-130 471.1 662 45.2
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.9e-115 422.2 410 56.3
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 3.6e-113 415.2 534 44.6
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-101 377.1 723 36.1
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.0e-101 374.4 494 43.3
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 2.0e-92 346.3 340 54.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 2.1e-89 336.3 2700 22.9
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.2e-88 331.6 906 31.0
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.4e-85 323.6 478 42.5
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 3.5e-84 318.9 328 55.8
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.5e-79 303.5 395 42.8
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.7e-52 213.0 179 65.4
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 8.7e-51 208.0 350 35.7
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.9e-50 206.8 345 35.1
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 9.9e-47 194.5 183 56.3
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.9e-45 190.3 322 39.4
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 6.7e-43 181.8 243 45.3
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.9e-42 180.3 234 44.9
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-41 177.6 333 38.1
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.0e-39 170.2 186 51.1
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 1.0e-35 157.9 346 32.9
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.7e-34 152.1 500 29.4
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 5.3e-32 145.6 205 43.4
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.2e-31 144.4 142 56.3
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 4.6e-28 132.5 246 38.6
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.0e-27 131.3 180 43.3
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 2.0e-26 127.1 146 45.2
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 7.4e-26 125.2 120 51.7
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.1e-21 111.3 122 50.0
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.2e-21 108.6 253 31.6
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.0e-19 103.2 79 60.8
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 3.9e-19 102.8 119 47.9
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.1e-18 101.3 345 26.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.0e-18 100.5 337 28.2
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.0e-18 100.5 337 28.2
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 7.4e-18 98.6 141 43.3
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 1.7e-17 97.4 145 42.8
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 8.2e-17 95.1 65 69.2
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.4e-16 94.4 578 21.5
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.1e-16 92.8 414 25.4
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 9.1e-16 91.7 163 39.3
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-15 91.3 352 23.9
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.0e-14 88.2 342 23.1
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-12 80.9 154 38.3
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 8.0e-12 78.6 122 35.2
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 5.2e-11 75.9 140 30.7
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.2e-09 68.6 148 33.8
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.4e-08 67.0 87 49.4
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 4.1e-08 66.2 64 48.4
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.2e-06 60.5 222 24.8
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 3.8e-06 59.7 70 51.4
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 6.5e-06 58.9 57 54.4
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 8.5e-06 58.5 131 30.5


User provided reference genes

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