Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10780 Coffea canephora HOM05D003978 ORTHO05D015758 2.4e-32 141.4 63 100.0
Oeu013852.1 Olea europaea HOM05D003978 ORTHO05D015758 9.7e-13 76.3 52 65.4
Sopen11g003980 Solanum pennellii HOM05D003978 ORTHO05D006033 3.7e-12 74.3 40 70.0
PGSC0003DMG400031080 Solanum tuberosum HOM05D003978 ORTHO05D006033 3.7e-12 74.3 40 70.0
Nitab4.5_0001450g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 1.8e-11 72.0 40 70.0
Nitab4.5_0002285g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 1.8e-11 72.0 40 70.0
Lsat_1_v5_gn_2_113200 Lactuca sativa HOM05D003978 ORTHO05D006033 2.4e-11 71.6 40 75.0
Dinv41792 Davidia involucrata HOM05D003978 ORTHO05D006033 4.1e-11 70.9 40 77.5
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 4.1e-11 70.9 40 72.5
SalBow6G2109 Salvia bowleyana HOM05D003978 ORTHO05D015758 5.3e-11 70.5 44 70.5
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 5.3e-11 70.5 40 72.5
SGA_v2.0_scaffold51G18710 Striga asiatica HOM05D003978 ORTHO05D006033 5.3e-11 70.5 41 70.7
ECA238G2158 Erigeron canadensis HOM05D003978 ORTHO05D006033 6.9e-11 70.1 40 72.5
HanXRQChr14g0456531 Helianthus annuus HOM05D003978 ORTHO05D006033 6.9e-11 70.1 40 72.5
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 1.2e-10 69.3 40 80.0
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea HOM05D003978 ORTHO05D006033 2.0e-10 68.6 38 84.2
MSTRG.8127 Avicennia marina HOM05D003978 ORTHO05D006033 2.0e-10 68.6 40 72.5
Migut.F01713 Erythranthe guttata HOM05D003978 ORTHO05D006033 2.0e-10 68.6 40 67.5
Lj2A22G66 Lonicera japonica HOM05D003978 ORTHO05D015758 2.0e-10 68.6 45 68.9
Peaxi162Scf00253g00327 Petunia axillaris HOM05D003978 ORTHO05D006033 2.0e-10 68.6 40 70.0
Sopen03g019840 Solanum pennellii HOM05D003978 ORTHO05D006033 2.0e-10 68.6 40 70.0
CSS0034790 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 4.5e-10 67.4 40 75.0
PGR044G1831 Punica granatum HOM05D003978 ORTHO05D006033 4.5e-10 67.4 38 81.6
Duzib128G0911 Durio zibethinus HOM05D003978 ORTHO05D006033 5.9e-10 67.0 44 77.3
ClCG05G021270 Citrullus lanatus HOM05D003978 ORTHO05D006033 7.7e-10 66.6 40 72.5
CsaV3_5G036020 Cucumis sativus L. HOM05D001446 ORTHO05D001360 7.7e-10 66.6 40 72.5
PSO339G1141 Papaver somniferum HOM05D003978 ORTHO05D006033 7.7e-10 66.6 40 67.5
PSO801G0725 Papaver somniferum HOM05D003978 ORTHO05D006033 7.7e-10 66.6 40 67.5
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 7.7e-10 66.6 40 70.0
MSTRG.9145 Avicennia marina HOM05D003978 ORTHO05D006033 1.0e-09 66.2 40 70.0
CiPaw.02G171600 Carya illinoinensis HOM05D003978 ORTHO05D006033 1.0e-09 66.2 40 75.0
Haze_16750 Corylus avellana HOM05D003978 ORTHO05D015758 1.0e-09 66.2 38 78.9
MD07G1168200 Malus domestica HOM05D003978 ORTHO05D006033 1.0e-09 66.2 40 77.5
MELO3C012401.2 Cucumis melo HOM05D003978 ORTHO05D006033 1.3e-09 65.9 38 76.3
MD01G1101500 Malus domestica HOM05D003978 ORTHO05D006033 1.3e-09 65.9 40 77.5
Potri.008G033000 Populus trichocarpa HOM05D003978 ORTHO05D006033 1.3e-09 65.9 40 72.5
Glyma.20G113200 Glycine max HOM05D003978 ORTHO05D006033 1.7e-09 65.5 40 75.0
Sed0002426 Sechium edule HOM05D003978 ORTHO05D006033 1.7e-09 65.5 40 70.0
MBI04_g13679_MAGBIO Magnolia biondii HOM05D003978 ORTHO05D006033 2.2e-09 65.1 41 70.7
Sabra08G0021900 Salix brachista HOM05D003978 ORTHO05D006033 2.2e-09 65.1 38 76.3
Glyma.10G276500 Glycine max HOM05D003978 ORTHO05D006033 2.9e-09 64.7 40 75.0
CiPaw.01G267500 Carya illinoinensis HOM05D003978 ORTHO05D006033 3.8e-09 64.3 40 75.0
Ca_11194_v3 Cicer arietinum L. HOM05D003978 ORTHO05D006033 3.8e-09 64.3 40 72.5
Lj3A937G87 Lonicera japonica HOM05D003978 ORTHO05D006033 3.8e-09 64.3 42 66.7
Lj5g0022774 Lotus japonicus HOM05D003978 ORTHO05D006033 3.8e-09 64.3 40 75.0
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 3.8e-09 64.3 40 72.5
Thecc.10G086400 Theobroma cacao HOM05D003978 ORTHO05D006033 3.8e-09 64.3 40 77.5
ATR0665G443 Amborella trichopoda HOM05D003978 ORTHO05D015758 5.0e-09 63.9 40 75.0
DCAR_006405 Daucus carota HOM05D003978 ORTHO05D006033 5.0e-09 63.9 39 69.2
Oeu007407.1 Olea europaea HOM05D003978 ORTHO05D006033 5.0e-09 63.9 38 73.7
Sed0020000 Sechium edule HOM05D003978 ORTHO05D006033 6.5e-09 63.5 38 73.7
Haze_16751 Corylus avellana HOM05D003978 ORTHO05D006033 8.5e-09 63.2 59 55.9
Potri.010G228700 Populus trichocarpa HOM05D003978 ORTHO05D006033 8.5e-09 63.2 40 72.5
Sabra10G0177400 Salix brachista HOM05D003978 ORTHO05D006033 8.5e-09 63.2 40 72.5
Cfa001800 Carpinus fangiana HOM05D003978 ORTHO05D006033 1.1e-08 62.8 40 72.5
VMungo0720G1413 Vigna mungo HOM05D003978 ORTHO05D006033 1.1e-08 62.8 40 70.0
CANSAT64G1994 Cannabis sativa HOM05D003978 ORTHO05D006033 1.4e-08 62.4 40 72.5
Cpa.g.sc53.146 Carica papaya HOM05D003978 ORTHO05D015758 1.4e-08 62.4 38 78.9
Eucgr.J01044 Eucalyptus grandis HOM05D003978 ORTHO05D006033 1.9e-08 62.0 36 69.4
GSVIVG01016195001 Vitis vinifera HOM05D003978 ORTHO05D006033 1.9e-08 62.0 38 76.3
Duzib114G0897 Durio zibethinus HOM05D003978 ORTHO05D006033 2.5e-08 61.6 40 72.5
Gohir.D10G209000 Gossypium hirsutum HOM05D003978 ORTHO05D006033 2.5e-08 61.6 40 75.0
Gorai.011G235100 Gossypium raimondii HOM05D003978 ORTHO05D006033 2.5e-08 61.6 40 75.0
RcHm_v2.0_Chr1g0362301 Rosa chinensis HOM05D003978 ORTHO05D006033 2.5e-08 61.6 40 72.5
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 4.2e-08 60.8 40 72.5
Thhalv10023624m.g Eutrema salsugineum HOM05D003978 ORTHO05D006033 5.5e-08 60.5 32 75.0
TPR.G26271 Trifolium pratense HOM05D003978 ORTHO05D006033 5.5e-08 60.5 40 70.0
TWI15G0746 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 5.5e-08 60.5 40 72.5
TWI38G1352 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 5.5e-08 60.5 40 70.0
SEGI_12114 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 1.2e-07 59.3 40 62.5
Zm00001eb217310 Zea mays HOM05D003978 ORTHO05D006033 1.2e-07 59.3 40 70.0
Cfa001801 Carpinus fangiana HOM05D003978 ORTHO05D006033 1.6e-07 58.9 38 73.7
TAR623G0946 Trochodendron aralioides HOM05D003978 ORTHO05D006033 1.6e-07 58.9 40 65.0
AL2G15940 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 2.1e-07 58.5 34 70.6
SEGI_04637 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 2.1e-07 58.5 40 60.0
CANSAT80G2867 Cannabis sativa HOM05D003978 ORTHO05D006033 2.7e-07 58.2 37 64.9
Carub.0002s0468 Capsella rubella HOM05D003978 ORTHO05D006033 2.7e-07 58.2 34 70.6
Ah.08g211530 Amaranthus hybridus HOM05D003978 ORTHO05D006033 3.6e-07 57.8 31 71.0
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 3.6e-07 57.8 40 65.0
CsaV3_2G021100 Cucumis sativus L. HOM05D003978 ORTHO05D006033 3.6e-07 57.8 40 65.0
Aqoxy2G01695 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 6.1e-07 57.0 38 63.2
CsaV3_2G020900 Cucumis sativus L. HOM05D003978 ORTHO05D006033 6.1e-07 57.0 40 65.0
TWI63G1197 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 6.1e-07 57.0 40 67.5
Atru.chr12.874 Acer truncatum HOM05D003978 ORTHO05D015758 1.4e-06 55.8 36 69.4
vmacro07306 Vaccinium macrocarpon HOM05D003978 ORTHO05D006033 1.4e-06 55.8 41 65.9
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 1.8e-06 55.5 36 69.4
FAN06G3745 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.8e-06 55.5 40 65.0
FAN10G1475 Fragaria x ananassa HOM05D003978 ORTHO05D006033 1.8e-06 55.5 40 65.0
Lalb_Chr19g0129391 Lupinus albus HOM05D003978 ORTHO05D015758 1.8e-06 55.5 38 71.1
QL07p042820 Quercus lobata HOM05D003978 ORTHO05D006033 2.3e-06 55.1 36 66.7
TAR636G3645 Trochodendron aralioides HOM05D001807 ORTHO05D002044 2.3e-06 55.1 40 67.5
FvH4_7g18520 Fragaria vesca HOM05D003978 ORTHO05D006033 3.0e-06 54.7 40 62.5
THA.LOC104809978 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 3.0e-06 54.7 34 70.6
Aa31LG1G21070 Aethionema arabicum HOM05D003978 ORTHO05D006033 3.9e-06 54.3 40 70.0
CARHR052280 Cardamine hirsuta HOM05D003978 ORTHO05D006033 3.9e-06 54.3 34 67.6
CDE02G4598 Ceratophyllum demersum HOM05D003978 ORTHO05D006033 3.9e-06 54.3 40 57.5
TAR633G1384 Trochodendron aralioides HOM05D003978 ORTHO05D006033 3.9e-06 54.3 40 65.0
AL6G13910 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 5.1e-06 53.9 40 67.5
Thhalv10015645m.g Eutrema salsugineum HOM05D003978 ORTHO05D015758 5.1e-06 53.9 40 67.5
FAN01G2622 Fragaria x ananassa HOM05D003978 ORTHO05D006033 5.1e-06 53.9 38 65.8
FAN06G5022 Fragaria x ananassa HOM05D003978 ORTHO05D006033 5.1e-06 53.9 38 65.8
THA.LOC104823202 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 5.1e-06 53.9 32 75.0
BcaB01g05775 Brassica carinata HOM05D003978 ORTHO05D015758 6.7e-06 53.5 38 71.1
A03p01600 Brassica napus HOM05D003978 ORTHO05D006033 6.7e-06 53.5 40 65.0
BolC3t12747H Brassica oleracea HOM05D003978 ORTHO05D006033 6.7e-06 53.5 40 65.0
BraA03t09534Z Brassica rapa HOM05D003978 ORTHO05D006033 6.7e-06 53.5 40 65.0
Sp2g04070 Schrenkiella parvula HOM05D003978 ORTHO05D006033 6.7e-06 53.5 32 68.8
Carub.0006s0323 Capsella rubella HOM05D003978 ORTHO05D006033 8.8e-06 53.1 40 67.5
Lsat_1_v5_gn_9_117980 Lactuca sativa HOM05D000142 ORTHO05D000124 8.8e-06 53.1 47 44.7
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 8.8e-06 53.1 40 67.5
THA.LOC104816430 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 8.8e-06 53.1 40 67.5


User provided reference genes

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