Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 2.6e-169 598.6 298 100.0
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.0e-148 529.3 298 87.6
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 1.4e-146 523.1 298 86.2
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 1.3e-144 516.5 299 84.9
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.7e-144 516.2 293 85.7
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.7e-144 516.2 298 84.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 3.9e-144 515.0 331 78.2
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.9e-143 512.7 298 84.2
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 2.8e-142 508.8 298 83.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 3.6e-142 508.4 301 83.1
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 4.7e-142 508.1 298 84.2
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.4e-141 506.5 298 83.2
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.8e-141 506.1 292 84.6
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.3e-141 505.8 298 84.2
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 3.1e-141 505.4 298 83.6
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 4.0e-141 505.0 298 80.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 4.0e-141 505.0 309 82.2
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 4.0e-141 505.0 298 83.9
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.8e-141 504.2 298 82.2
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 8.9e-141 503.8 298 82.9
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.0e-140 502.7 299 82.9
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.0e-140 502.7 299 82.6
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 2.0e-140 502.7 298 83.2
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 4.4e-140 501.5 302 83.1
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 5.8e-140 501.1 299 82.9
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 5.8e-140 501.1 298 82.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 5.8e-140 501.1 296 83.1
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 9.8e-140 500.4 299 82.3
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.3e-139 500.0 298 82.2
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 1.7e-139 499.6 298 82.2
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.9e-139 498.8 299 82.3
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 4.9e-139 498.0 299 81.9
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 6.4e-139 497.7 298 82.2
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.4e-138 496.5 292 83.2
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.9e-138 496.1 295 81.0
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.2e-137 493.4 300 81.3
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.7e-137 492.3 298 80.5
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.3e-136 490.0 298 80.2
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.3e-136 489.2 298 80.2
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 8.6e-136 487.3 299 79.3
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 8.6e-136 487.3 329 74.8
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 8.6e-136 487.3 298 79.5
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 8.6e-136 487.3 295 80.3
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.5e-135 486.5 294 80.3
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.9e-135 486.1 301 80.1
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.5e-135 485.7 298 80.2
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 2.5e-135 485.7 294 80.6
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 4.3e-135 485.0 298 80.5
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 7.3e-135 484.2 295 81.0
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 2.8e-134 482.3 294 78.6
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 2.8e-134 482.3 292 79.1
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 3.6e-134 481.9 292 80.8
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 6.2e-134 481.1 298 79.9
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.2e-134 481.1 333 75.1
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.1e-133 480.3 297 77.4
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 2.3e-133 479.2 298 77.5
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 4.0e-133 478.4 295 78.6
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 5.2e-133 478.0 298 78.9
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.9e-133 477.2 298 78.9
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 8.9e-133 477.2 299 78.6
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 2.6e-132 475.7 291 79.0
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 3.4e-132 475.3 297 77.8
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.4e-132 474.9 299 78.6
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 4.4e-132 474.9 300 79.3
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 2.2e-131 472.6 298 78.2
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.4e-130 468.0 282 80.5
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 5.4e-130 468.0 291 78.4
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 6.0e-129 464.5 276 81.9
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.0e-128 462.2 311 75.9
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.6e-128 460.7 298 76.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 8.6e-128 460.7 298 74.5
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 3.3e-127 458.8 291 74.9
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 4.3e-127 458.4 291 74.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 7.3e-127 457.6 291 74.6
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 7.3e-127 457.6 291 74.6
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 7.3e-127 457.6 291 74.6
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 7.3e-127 457.6 291 74.6
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.6e-126 455.3 298 77.5
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 4.7e-126 454.9 279 81.0
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 6.2e-126 454.5 298 73.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 1.4e-125 453.4 294 73.8
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.8e-125 453.0 298 72.8
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.0e-125 451.8 298 72.8
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 5.2e-125 451.4 298 71.8
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 2.0e-124 449.5 239 90.8
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 2.6e-124 449.1 268 84.7
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.3e-123 446.8 248 86.7
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.9e-122 443.0 296 75.3
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.3e-119 431.8 290 71.4
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.8e-118 429.1 270 79.6
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 7.6e-116 421.0 237 84.0
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 4.6e-113 411.8 291 69.1
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.3e-112 409.5 247 82.6
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 1.1e-111 407.1 231 84.0
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.1e-111 407.1 267 72.7
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 2.0e-108 396.4 222 85.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 4.9e-99 365.2 238 75.2
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 2.9e-91 339.3 282 67.7
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.9e-91 339.3 259 62.2
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.1e-90 337.4 287 58.5
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 3.2e-90 335.9 291 56.4
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.9e-87 326.6 410 48.3
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 7.2e-82 308.1 208 71.2
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 3.8e-67 259.2 272 51.8
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.6e-63 246.5 258 57.8
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 5.9e-60 235.3 146 80.1
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 4.8e-54 215.7 293 39.6
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 3.1e-53 213.0 232 47.0
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.7e-51 207.2 120 81.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 6.5e-51 205.3 117 78.6
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 3.6e-49 199.5 190 55.3
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 2.6e-47 193.4 218 51.8
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 8.0e-41 171.8 175 54.9
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 2.3e-35 153.7 111 69.4
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 3.3e-34 149.8 211 42.2
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.5e-26 123.6 81 75.3
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.6e-25 120.9 73 76.7
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.5e-18 97.1 52 84.6
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.2e-17 94.7 60 76.7
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.3e-16 90.5 48 79.2
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 1.2e-15 88.2 190 35.8
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 7.5e-15 85.5 139 41.0
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 2.2e-14 84.0 52 71.2
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.7e-14 83.2 47 78.7
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 5.4e-13 79.3 149 35.6
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 3.9e-11 73.2 54 68.5
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-10 71.6 59 66.1
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.6e-09 67.8 181 32.6
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 4.7e-09 66.2 181 30.4
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 4.7e-09 66.2 168 29.8
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 2.0e-07 60.8 166 30.7
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.4e-07 60.1 83 45.8
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 3.4e-07 60.1 83 45.8
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 3.4e-07 60.1 170 28.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.4e-07 59.7 66 54.5
Lsat_1_v5_gn_3_11781 Lactuca sativa HOM05D000104 ORTHO05D008354 3.8e-06 56.6 53 52.8
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 4.9e-06 56.2 28 82.1
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 6.4e-06 55.8 50 52.0
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 6.4e-06 55.8 50 52.0
Lsat_1_v5_gn_5_43780 Lactuca sativa HOM05D005598 ORTHO05D008354 6.4e-06 55.8 40 65.0
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 8.4e-06 55.5 59 54.2


User provided reference genes

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