Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g08750 Coffea canephora HOM05D003084 ORTHO05D003580 4.2e-80 301.2 144 100.0
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 3.4e-21 105.5 67 77.6
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 4.4e-21 105.1 65 78.5
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 9.9e-21 104.0 65 76.9
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.3e-20 103.6 65 76.9
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 1.7e-20 103.2 65 76.9
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 2.9e-20 102.4 65 75.4
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.9e-20 102.4 65 75.4
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.9e-20 102.4 65 75.4
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 2.9e-20 102.4 65 75.4
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 3.8e-20 102.1 65 75.4
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.8e-20 102.1 65 76.9
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 4.9e-20 101.7 65 75.4
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 6.4e-20 101.3 65 76.9
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 8.4e-20 100.9 65 76.9
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.1e-19 100.5 65 75.4
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.1e-19 100.5 65 75.4
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 7.1e-19 97.8 65 75.4
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 9.3e-19 97.4 65 72.3
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 9.3e-19 97.4 65 73.8
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 1.6e-18 96.7 73 68.5
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.6e-18 96.7 65 73.8
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 2.7e-18 95.9 65 72.3
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 7.8e-18 94.4 60 76.7
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 7.8e-18 94.4 65 72.3
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 1.0e-17 94.0 65 70.8
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 1.0e-17 94.0 65 69.2
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.7e-17 93.2 65 72.3
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.9e-17 92.0 65 70.8
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 1.9e-16 89.7 73 63.0
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.6e-16 88.2 47 85.1
Sopen07g021280 Solanum pennellii HOM05D003084 ORTHO05D003580 1.5e-13 80.1 48 75.0
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 3.4e-13 79.0 61 65.6
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 6.4e-12 74.7 62 62.9
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 9.3e-11 70.9 35 91.4
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 4.8e-07 58.5 66 51.5


User provided reference genes

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