Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 5.2e-81 304.3 149 100.0
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.6e-37 159.8 111 78.4
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 6.6e-36 154.5 111 74.8
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 1.5e-35 153.3 111 73.9
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.5e-35 152.5 111 73.0
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 2.5e-35 152.5 111 73.9
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 9.5e-35 150.6 111 71.2
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 1.2e-34 150.2 111 71.2
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 1.6e-34 149.8 111 70.3
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.6e-34 149.8 111 72.1
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 2.8e-34 149.1 111 69.4
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 2.8e-34 149.1 111 69.4
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 2.8e-34 149.1 111 69.4
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 2.8e-34 149.1 111 69.4
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 2.8e-34 149.1 111 69.4
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 3.6e-34 148.7 111 70.3
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 4.7e-34 148.3 111 70.3
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 6.2e-34 147.9 111 69.4
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 6.2e-34 147.9 111 69.4
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 6.2e-34 147.9 111 72.1
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 6.2e-34 147.9 111 72.1
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 8.1e-34 147.5 111 70.3
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 8.1e-34 147.5 111 69.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 8.1e-34 147.5 115 65.2
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 8.1e-34 147.5 111 68.5
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 8.1e-34 147.5 108 72.2
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 1.1e-33 147.1 111 68.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.1e-33 147.1 111 69.4
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 1.4e-33 146.7 111 68.5
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 1.4e-33 146.7 111 66.7
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.8e-33 146.4 111 68.5
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 2.4e-33 146.0 111 68.5
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 3.1e-33 145.6 111 67.6
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 3.1e-33 145.6 111 68.5
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 3.1e-33 145.6 110 69.1
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 4.0e-33 145.2 111 67.6
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 4.0e-33 145.2 111 69.4
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 4.0e-33 145.2 111 65.8
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 4.0e-33 145.2 111 65.8
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 5.2e-33 144.8 111 67.6
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 5.2e-33 144.8 111 67.6
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 5.2e-33 144.8 111 69.4
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 6.8e-33 144.4 111 68.5
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 6.8e-33 144.4 111 65.8
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.2e-32 143.7 111 67.6
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.2e-32 143.7 111 67.6
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.2e-32 143.7 111 67.6
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.2e-32 143.7 110 69.1
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.5e-32 143.3 111 66.7
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 2.0e-32 142.9 111 66.7
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 2.0e-32 142.9 111 66.7
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 2.0e-32 142.9 111 65.8
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.0e-32 142.9 111 65.8
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 2.0e-32 142.9 111 68.5
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 2.6e-32 142.5 111 65.8
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 2.6e-32 142.5 111 67.6
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 3.4e-32 142.1 111 65.8
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 4.4e-32 141.7 111 65.8
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.4e-32 141.7 111 66.7
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 4.4e-32 141.7 111 65.8
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 5.8e-32 141.4 111 66.7
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 5.8e-32 141.4 111 64.9
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 7.6e-32 141.0 111 65.8
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 7.6e-32 141.0 111 66.7
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 9.9e-32 140.6 111 65.8
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 9.9e-32 140.6 111 66.7
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.3e-31 140.2 111 66.7
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 1.3e-31 140.2 109 66.1
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 1.7e-31 139.8 111 64.9
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 2.9e-31 139.0 111 64.0
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.9e-31 138.3 108 66.7
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.0
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.9
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.9
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.9
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.9
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.9
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 4.9e-31 138.3 111 64.9
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 6.4e-31 137.9 111 64.9
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 1.1e-30 137.1 111 64.0
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.9e-30 136.3 111 64.0
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 2.4e-30 136.0 125 61.6
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 2.4e-30 136.0 111 64.9
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 3.2e-30 135.6 111 64.0
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 9.2e-30 134.0 111 63.1
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 9.2e-30 134.0 136 55.9
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.2e-29 133.7 112 62.5
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-29 133.7 136 55.9
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.2e-29 133.7 111 64.0
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.6e-29 133.3 130 56.2
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 7.8e-29 131.0 136 55.1
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.6e-27 124.0 105 61.0
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.6e-27 124.0 105 61.0
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 3.6e-26 122.1 178 45.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 5.2e-25 118.2 72 83.3
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 6.9e-25 117.9 70 81.4
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 6.4e-23 111.3 186 40.9
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 5.4e-22 108.2 113 54.0
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 6.6e-20 101.3 113 50.4
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 6.2e-18 94.7 80 63.8
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.4e-17 93.6 112 44.6
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.8e-17 93.2 114 50.9
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 5.3e-17 91.7 114 43.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 5.3e-17 91.7 88 56.8
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 6.9e-17 91.3 114 45.6
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 9.0e-17 90.9 80 63.8
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 1.5e-16 90.1 80 61.2
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 2.0e-16 89.7 104 50.0
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 7.6e-16 87.8 80 58.8
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 7.6e-16 87.8 80 57.5
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 6.4e-15 84.7 80 56.2
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 6.4e-15 84.7 80 56.2
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 2.3e-12 76.3 88 50.0
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 1.8e-09 66.6 105 40.0
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.3e-07 60.5 111 34.2
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 2.9e-07 59.3 32 81.2
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.8e-07 58.9 33 84.8
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.3e-06 54.3 41 61.0


User provided reference genes

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